Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   GSN03_RS06580 Genome accession   NZ_CP047366
Coordinates   1290034..1290357 (-) Length   107 a.a.
NCBI ID   WP_000578889.1    Uniprot ID   -
Organism   Bacillus nitratireducens strain BM02     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1285034..1295357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSN03_RS06555 (GSN03_06480) - 1285212..1286498 (+) 1287 WP_212089689.1 D-alanyl-D-alanine carboxypeptidase family protein -
  GSN03_RS06560 (GSN03_06485) sipW 1286701..1287270 (+) 570 WP_212091510.1 signal peptidase I SipW -
  GSN03_RS06565 (GSN03_06490) - 1287332..1287922 (+) 591 WP_212089690.1 TasA family protein -
  GSN03_RS06570 (GSN03_06495) - 1288078..1288926 (+) 849 WP_212089692.1 DUF4047 domain-containing protein -
  GSN03_RS06575 (GSN03_06500) calY 1289364..1289957 (+) 594 WP_212089694.1 biofilm matrix protein CalY -
  GSN03_RS06580 (GSN03_06505) sinR 1290034..1290357 (-) 324 WP_000578889.1 helix-turn-helix domain-containing protein Regulator
  GSN03_RS06585 (GSN03_06510) - 1290440..1290571 (-) 132 WP_212089696.1 anti-repressor SinI family protein -
  GSN03_RS06590 (GSN03_06515) inhA1 1290913..1293300 (+) 2388 WP_212089698.1 M6 family metalloprotease immune inhibitor InhA1 -
  GSN03_RS06595 (GSN03_06520) - 1293472..1294839 (+) 1368 WP_000028363.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12304.11 Da        Isoelectric Point: 8.5750

>NTDB_id=413031 GSN03_RS06580 WP_000578889.1 1290034..1290357(-) (sinR) [Bacillus nitratireducens strain BM02]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=413031 GSN03_RS06580 WP_000578889.1 1290034..1290357(-) (sinR) [Bacillus nitratireducens strain BM02]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCACTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATCCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTCGATACTTTACTTCACGATGAAACAACTACGGAAAGTCATCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAGTTTCTCGAGTTTACACAATGGAAGAAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment