Detailed information NTG0041302

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECABU_RS15250
• Genome accession: NC_017631
• Coordinates: 3071829..3072821 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli ABU 83972
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3066829..3077821

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECABU_RS15230 (ECABU_c30120)	ygbM	3067460..3068236 (+)	777	WP_001136915.1	HPr family phosphocarrier protein	-
ECABU_RS15235 (ECABU_c30130)	ygbN	3068325..3069689 (+)	1365	WP_000104433.1	GntP family transporter	-
ECABU_RS15240 (ECABU_c30140)	-	3069832..3070875 (-)	1044	WP_001161574.1	MBL fold metallo-hydrolase	-
ECABU_RS15245 (ECABU_c30150)	-	3071100..3071651 (+)	552	WP_001179443.1	flavodoxin family protein	-
ECABU_RS15250 (ECABU_c30160)	rpoS	3071829..3072821 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ECABU_RS15255 (ECABU_c30170)	nlpD	3072884..3073978 (-)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
ECABU_RS15260 (ECABU_c30180)	pcm	3074163..3074789 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
ECABU_RS15265 (ECABU_c30190)	surE	3074783..3075544 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECABU_RS15270 (ECABU_c30200)	truD	3075525..3076574 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
ECABU_RS15275 (ECABU_c30210)	ispF	3076571..3077050 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECABU_RS15280 (ECABU_c30220)	ispD	3077050..3077760 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=41302 ECABU_RS15250 WP_000081550.1 3071829..3072821(-) (rpoS) [Escherichia coli ABU 83972]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=41302 ECABU_RS15250 WP_000081550.1 3071829..3072821(-) (rpoS) [Escherichia coli ABU 83972]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715