Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GSN03_RS00220 Genome accession   NZ_CP047366
Coordinates   40410..40694 (-) Length   94 a.a.
NCBI ID   WP_000843037.1    Uniprot ID   A0A366FUU6
Organism   Bacillus nitratireducens strain BM02     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35410..45694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSN03_RS00185 (GSN03_00185) tmk 35564..36190 (+) 627 WP_000677223.1 dTMP kinase -
  GSN03_RS00190 (GSN03_00190) holB 36226..37209 (+) 984 WP_212088766.1 DNA polymerase III subunit delta' -
  GSN03_RS00195 (GSN03_00195) - 37215..38042 (+) 828 WP_000272430.1 PSP1 domain-containing protein -
  GSN03_RS00200 (GSN03_00200) yabA 38057..38407 (+) 351 WP_000412059.1 DNA replication initiation control protein YabA -
  GSN03_RS00205 (GSN03_00205) - 38528..39268 (+) 741 WP_212088768.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  GSN03_RS00210 (GSN03_00210) - 39255..39545 (+) 291 WP_212088770.1 GIY-YIG nuclease family protein -
  GSN03_RS00215 (GSN03_00215) rsmI 39514..40389 (+) 876 WP_071771798.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GSN03_RS00220 (GSN03_00220) abrB 40410..40694 (-) 285 WP_000843037.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GSN03_RS00225 (GSN03_00225) metG 41061..43043 (+) 1983 WP_212088772.1 methionine--tRNA ligase -
  GSN03_RS00230 (GSN03_00230) - 43212..43979 (+) 768 WP_000895832.1 TatD family hydrolase -
  GSN03_RS00235 (GSN03_00235) rnmV 44239..44796 (+) 558 WP_000692829.1 ribonuclease M5 -
  GSN03_RS00240 (GSN03_00240) rsmA 44793..45671 (+) 879 WP_212088774.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10476.14 Da        Isoelectric Point: 4.7174

>NTDB_id=413013 GSN03_RS00220 WP_000843037.1 40410..40694(-) (abrB) [Bacillus nitratireducens strain BM02]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QVLNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=413013 GSN03_RS00220 WP_000843037.1 40410..40694(-) (abrB) [Bacillus nitratireducens strain BM02]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTGGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGCGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGAAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAGTTTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366FUU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

84.043

100

0.84

Multiple sequence alignment