Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   GSN03_RS00020 Genome accession   NZ_CP047366
Coordinates   3022..4149 (+) Length   375 a.a.
NCBI ID   WP_000470960.1    Uniprot ID   A0A2B2H0L9
Organism   Bacillus nitratireducens strain BM02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSN03_RS00005 (GSN03_00005) dnaA 1..1341 (+) 1341 WP_071744228.1 chromosomal replication initiator protein DnaA -
  GSN03_RS00010 (GSN03_00010) dnaN 1524..2669 (+) 1146 WP_071744229.1 DNA polymerase III subunit beta -
  GSN03_RS00015 (GSN03_00015) yaaA 2798..3010 (+) 213 WP_000835828.1 S4 domain-containing protein YaaA -
  GSN03_RS00020 (GSN03_00020) recF 3022..4149 (+) 1128 WP_000470960.1 DNA replication/repair protein RecF Machinery gene
  GSN03_RS00025 (GSN03_00025) gyrB 4188..6110 (+) 1923 WP_000435984.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  GSN03_RS00030 (GSN03_00030) gyrA 6199..8670 (+) 2472 WP_212088756.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43482.86 Da        Isoelectric Point: 6.7812

>NTDB_id=413011 GSN03_RS00020 WP_000470960.1 3022..4149(+) (recF) [Bacillus nitratireducens strain BM02]
MFITEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGQIKGRLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSLDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVMNGTVDCEMDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=413011 GSN03_RS00020 WP_000470960.1 3022..4149(+) (recF) [Bacillus nitratireducens strain BM02]
TTGTTTATTACAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAGGACAAGGTCAATGT
AATTATTGGCGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCCATTTACGTATTGGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTATTCGATGGGATGAGGATTACGGTCAAATCAAAGGTAGATTACAAAAAAGAAATAGTTCT
TTGTCTTTAGAATTAAATATTTCCAAAAAAGGTAAAAAGGCAAAGCTAAATCAACTTGAACAACAAAAGTTAAGCCAATA
CATTGGTGAAATGAACGTTGTGATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAACTAGGACAAATAGCGCCCGTTTATTTGTATGAACTAAGCCAATATCAAAAAGTGCTCACGCAACGA
AATCACTTGCTTAAAAAGATGCAAGGGAATAGTAAAAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTCATTGA
GCATGGTGCAAAAATATTGCGAAAACGTTTTGAGTTTTTGCATTTACTACAAGAATGGGCTGCGCCGATACATCGCGGGA
TTAGCAGGGGGTTAGAGGAATTAGAAATCGTCTATAAACCAAGCTTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACAACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCACAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCTATTCTTTTATTGGATGATGTGTTATCA
GAATTAGATGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAATGAACGGCACGGTAGATTGTGAAATGGACA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B2H0L9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

67.391

98.133

0.661

Multiple sequence alignment