Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GTN30_RS12110 Genome accession   NZ_CP047363
Coordinates   2289990..2291351 (-) Length   453 a.a.
NCBI ID   WP_086043531.1    Uniprot ID   A0A1W7AEG9
Organism   Macrococcoides canis strain Epi0076A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2284990..2296351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTN30_RS12085 (GTN30_12050) cysE 2285415..2286062 (-) 648 WP_158290762.1 serine O-acetyltransferase -
  GTN30_RS12090 (GTN30_12055) gltX 2286307..2287764 (-) 1458 WP_164954092.1 glutamate--tRNA ligase -
  GTN30_RS12095 (GTN30_12060) ispF 2287779..2288258 (-) 480 WP_138072733.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GTN30_RS12100 (GTN30_12065) ispD 2288255..2288935 (-) 681 WP_138072736.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GTN30_RS12105 (GTN30_12070) - 2288928..2289977 (-) 1050 WP_164953974.1 PIN/TRAM domain-containing protein -
  GTN30_RS12110 (GTN30_12075) radA 2289990..2291351 (-) 1362 WP_086043531.1 DNA repair protein RadA Machinery gene
  GTN30_RS12115 (GTN30_12080) - 2291535..2293961 (-) 2427 WP_164954093.1 ATP-dependent Clp protease ATP-binding subunit -
  GTN30_RS12120 (GTN30_12085) - 2293971..2294975 (-) 1005 WP_164953975.1 protein arginine kinase -
  GTN30_RS12125 (GTN30_12090) - 2294965..2295351 (-) 387 WP_158290763.1 UvrB/UvrC motif-containing protein -
  GTN30_RS12130 (GTN30_12095) - 2295362..2295823 (-) 462 WP_086043535.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50181.81 Da        Isoelectric Point: 7.2378

>NTDB_id=413006 GTN30_RS12110 WP_086043531.1 2289990..2291351(-) (radA) [Macrococcoides canis strain Epi0076A]
MAKVKSTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKQKGPKNAISESQSDNKVEKLKDITKESVPRDHTQMKELDR
VLGGGIVPGSLILIGGDPGIGKSTLLLQVCAMLSQNHPVLYISGEESVRQTKLRADRLLEDAGELDVYAETNLQIIHETV
KKTKPKFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELMRIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
THHSYRILRAVKNRFGSTNEMGIFEMKNTGLKEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQSLVTPTSFHNP
RRMASGVDHNRLSLLMAVLEKKQGYLLQQQDAYVKVAGGVKLDEPAVDLSVIVSIASSYNDKPTRGDDCFIGEVGLTGEV
RRVARIEQRVQEAEKLGFKRVIIPKNNIGGWDFPGNIEVIGVTNINEALKIAF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=413006 GTN30_RS12110 WP_086043531.1 2289990..2291351(-) (radA) [Macrococcoides canis strain Epi0076A]
TTGGCAAAGGTTAAAAGTACATTTGAATGTATGGCCTGTGGTTATCAGTCACCGAAATGGATGGGGAAATGTCCAAATTG
TGGCGCATGGAATCAGATGGAAGAAGTTATTGAACATAAACAGAAAGGCCCTAAAAATGCGATTTCTGAATCACAAAGTG
ATAATAAAGTTGAAAAGTTAAAAGATATAACAAAAGAAAGTGTCCCTCGTGATCATACACAGATGAAAGAACTGGATCGT
GTACTTGGAGGAGGAATTGTCCCGGGTTCATTAATACTTATCGGAGGAGACCCTGGAATTGGGAAATCTACATTGCTGCT
GCAAGTTTGTGCAATGCTTTCTCAAAACCATCCTGTACTTTATATTTCCGGAGAGGAATCCGTAAGACAAACAAAACTAC
GAGCCGATCGTCTTTTAGAGGATGCAGGTGAGCTTGATGTCTATGCAGAAACAAACCTTCAAATTATACACGAAACGGTA
AAGAAAACAAAACCGAAATTTTTAGTTATCGATTCAATTCAAACGATATTTCATCCAGAAGTTACGAGTGCACCTGGTTC
TGTATCGCAAGTTAGAGAATGTACTCAAGAATTAATGCGTATCGCAAAGCAGATGAATATCGCCACATTTATCGTGGGGC
ATGTGACGAAAGAGGGCCAGATTGCAGGTCCAAGATTGCTTGAACATATGGTTGATACTGTCCTTTACTTTGAAGGAGAT
ACACATCACAGCTACAGAATATTACGTGCAGTGAAGAATCGTTTTGGTTCAACAAACGAAATGGGTATATTTGAAATGAA
GAATACAGGTCTTAAAGAAGTTCTGAATCCTTCAGAAATGTTCCTTGAAGAACGTACAAAAAATGTTGCAGGTTCGACTA
TTGTTGCAACGATGGAAGGTACGCGACCATTATTGGTTGAAGTTCAGTCGCTTGTAACTCCGACATCCTTTCACAATCCA
AGAAGGATGGCGTCAGGTGTCGATCATAATCGACTGAGTTTACTGATGGCTGTATTGGAGAAAAAACAAGGTTATTTATT
ACAGCAGCAAGATGCATACGTGAAAGTCGCGGGCGGAGTGAAACTTGATGAACCTGCTGTTGATTTAAGTGTTATCGTAA
GTATCGCATCAAGTTATAATGATAAGCCGACACGTGGAGATGATTGCTTTATCGGAGAGGTCGGTCTGACAGGTGAGGTA
AGACGTGTTGCACGTATAGAGCAGCGCGTACAAGAGGCTGAGAAGCTCGGTTTTAAACGTGTGATCATCCCTAAAAATAA
TATTGGTGGATGGGATTTTCCAGGAAATATCGAAGTCATTGGTGTAACAAATATAAATGAAGCATTGAAAATTGCATTTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

AAA domain (AAA_25)

(66-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W7AEG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.671
  radA Streptococcus pneumoniae Rx1

62.996

100

0.631
  radA Streptococcus pneumoniae D39

62.996

100

0.631
  radA Streptococcus pneumoniae R6

62.996

100

0.631
  radA Streptococcus pneumoniae TIGR4

62.996

100

0.631
  radA Streptococcus mitis NCTC 12261

62.996

100

0.631
  radA Streptococcus mitis SK321

62.996

100

0.631

Multiple sequence alignment