Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H4P49_RS08695 Genome accession   NZ_CP060065
Coordinates   1831260..1832687 (-) Length   475 a.a.
NCBI ID   WP_077777036.1    Uniprot ID   -
Organism   Escherichia coli strain G5     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1826260..1837687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4P49_RS08665 (H4P49_08665) yeeZ 1826315..1827139 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  H4P49_RS08670 (H4P49_08670) yeeY 1827185..1828114 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  H4P49_RS08675 (H4P49_08675) yoeI 1828329..1828391 (+) 63 WP_010723108.1 membrane protein YoeI -
  H4P49_RS08680 (H4P49_08680) plaP 1828381..1829739 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H4P49_RS08685 (H4P49_08685) tsuA 1829918..1830976 (+) 1059 WP_000492306.1 thiosulfate utilization transporter TsuA/YeeE -
  H4P49_RS08690 (H4P49_08690) tsuB 1830990..1831217 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H4P49_RS08695 (H4P49_08695) sbcB 1831260..1832687 (-) 1428 WP_077777036.1 exodeoxyribonuclease I Machinery gene
  H4P49_RS08700 (H4P49_08700) dacD 1832896..1834062 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H4P49_RS08705 (H4P49_08705) sbmC 1834181..1834654 (+) 474 WP_001105382.1 DNA gyrase inhibitor SbmC -
  H4P49_RS08710 (H4P49_08710) yeeA 1834853..1835911 (+) 1059 WP_001200891.1 FUSC family protein -
  H4P49_RS08715 (H4P49_08715) tmaR 1836083..1836412 (+) 330 WP_000450409.1 DUF496 family protein -
  H4P49_RS08720 (H4P49_08720) - 1836513..1836878 (-) 366 WP_001280456.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.79 Da        Isoelectric Point: 5.4740

>NTDB_id=412975 H4P49_RS08695 WP_077777036.1 1831260..1832687(-) (sbcB) [Escherichia coli strain G5]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFATRIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=412975 H4P49_RS08695 WP_077777036.1 1831260..1832687(-) (sbcB) [Escherichia coli strain G5]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACTCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCACCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577