Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GTN31_RS11550 Genome accession   NZ_CP047361
Coordinates   2249567..2250928 (-) Length   453 a.a.
NCBI ID   WP_086043531.1    Uniprot ID   A0A1W7AEG9
Organism   Macrococcoides canis strain SD607     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2244567..2255928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTN31_RS11520 (GTN31_11495) gltX 2244603..2246060 (-) 1458 WP_164943065.1 glutamate--tRNA ligase -
  GTN31_RS11525 (GTN31_11500) - 2246241..2246744 (+) 504 WP_164942913.1 hypothetical protein -
  GTN31_RS11530 (GTN31_11505) - 2246759..2247289 (+) 531 WP_164942914.1 hypothetical protein -
  GTN31_RS11535 (GTN31_11510) ispF 2247347..2247826 (-) 480 WP_164942915.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GTN31_RS11540 (GTN31_11515) ispD 2247814..2248506 (-) 693 WP_164942916.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GTN31_RS11545 (GTN31_11520) - 2248499..2249554 (-) 1056 WP_164942917.1 PIN/TRAM domain-containing protein -
  GTN31_RS11550 (GTN31_11525) radA 2249567..2250928 (-) 1362 WP_086043531.1 DNA repair protein RadA Machinery gene
  GTN31_RS11555 (GTN31_11530) - 2251113..2253539 (-) 2427 WP_164943066.1 ATP-dependent Clp protease ATP-binding subunit -
  GTN31_RS11560 (GTN31_11535) - 2253549..2254553 (-) 1005 WP_086043533.1 protein arginine kinase -
  GTN31_RS11565 (GTN31_11540) - 2254543..2254929 (-) 387 WP_158290763.1 UvrB/UvrC motif-containing protein -
  GTN31_RS11570 (GTN31_11545) - 2254940..2255401 (-) 462 WP_086043535.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50181.81 Da        Isoelectric Point: 7.2378

>NTDB_id=412974 GTN31_RS11550 WP_086043531.1 2249567..2250928(-) (radA) [Macrococcoides canis strain SD607]
MAKVKSTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKQKGPKNAISESQSDNKVEKLKDITKESVPRDHTQMKELDR
VLGGGIVPGSLILIGGDPGIGKSTLLLQVCAMLSQNHPVLYISGEESVRQTKLRADRLLEDAGELDVYAETNLQIIHETV
KKTKPKFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELMRIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
THHSYRILRAVKNRFGSTNEMGIFEMKNTGLKEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQSLVTPTSFHNP
RRMASGVDHNRLSLLMAVLEKKQGYLLQQQDAYVKVAGGVKLDEPAVDLSVIVSIASSYNDKPTRGDDCFIGEVGLTGEV
RRVARIEQRVQEAEKLGFKRVIIPKNNIGGWDFPGNIEVIGVTNINEALKIAF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=412974 GTN31_RS11550 WP_086043531.1 2249567..2250928(-) (radA) [Macrococcoides canis strain SD607]
TTGGCAAAGGTTAAAAGTACATTTGAATGTATGGCCTGTGGTTATCAGTCACCGAAATGGATGGGGAAATGTCCAAATTG
TGGTGCATGGAATCAGATGGAAGAAGTTATTGAACATAAACAGAAAGGCCCTAAAAATGCGATTTCTGAATCACAAAGTG
ATAATAAAGTTGAAAAGTTAAAAGATATAACAAAAGAAAGTGTCCCTCGTGATCATACACAGATGAAAGAACTGGATCGT
GTACTTGGAGGAGGAATTGTCCCGGGTTCATTAATACTTATCGGAGGAGATCCTGGAATTGGGAAATCTACATTGCTGCT
GCAAGTTTGTGCAATGCTTTCTCAAAACCATCCTGTACTTTATATTTCCGGAGAGGAATCCGTAAGACAGACAAAACTAC
GAGCCGATCGTCTTTTAGAGGATGCAGGTGAGCTTGATGTCTATGCAGAAACAAACCTTCAAATTATACACGAAACGGTA
AAGAAAACAAAACCGAAATTTTTAGTTATCGATTCAATTCAAACGATATTTCATCCAGAAGTTACGAGTGCACCTGGTTC
TGTATCGCAAGTTAGAGAATGTACTCAAGAATTAATGCGTATCGCAAAGCAGATGAATATCGCCACATTTATCGTGGGGC
ATGTGACGAAAGAGGGCCAGATTGCAGGTCCAAGATTGCTTGAACATATGGTTGATACTGTCCTTTACTTTGAAGGAGAT
ACACATCACAGCTACAGAATATTACGTGCAGTGAAGAATCGTTTTGGTTCAACAAACGAAATGGGTATATTTGAAATGAA
GAATACAGGTCTTAAAGAAGTTCTGAACCCTTCAGAAATGTTCCTTGAAGAACGTACAAAAAATGTAGCAGGTTCGACTA
TTGTTGCAACGATGGAAGGTACGCGACCATTATTGGTTGAAGTTCAGTCGCTTGTAACGCCGACATCCTTTCACAATCCA
AGAAGGATGGCGTCAGGTGTCGATCATAATCGACTGAGTTTACTGATGGCTGTATTGGAGAAAAAACAAGGTTATTTATT
ACAGCAGCAAGATGCATACGTGAAAGTCGCGGGCGGAGTGAAACTTGATGAACCTGCTGTTGATTTAAGTGTTATCGTAA
GTATCGCATCAAGTTATAATGATAAGCCGACACGTGGAGATGACTGCTTTATCGGAGAGGTCGGTCTGACAGGTGAGGTA
AGACGTGTTGCACGTATAGAACAGCGCGTACAAGAGGCTGAGAAGCTCGGTTTTAAACGTGTGATTATCCCTAAAAATAA
TATTGGTGGCTGGGATTTCCCTGGAAATATTGAAGTGATTGGTGTAACAAATATAAACGAAGCATTGAAAATTGCATTTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

AAA domain (AAA_25)

(66-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W7AEG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.671
  radA Streptococcus pneumoniae Rx1

62.996

100

0.631
  radA Streptococcus pneumoniae D39

62.996

100

0.631
  radA Streptococcus pneumoniae R6

62.996

100

0.631
  radA Streptococcus pneumoniae TIGR4

62.996

100

0.631
  radA Streptococcus mitis NCTC 12261

62.996

100

0.631
  radA Streptococcus mitis SK321

62.996

100

0.631

Multiple sequence alignment