Detailed information NTG0412962

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H4P49_RS05005
• Genome accession: NZ_CP060065
• Coordinates: 1043552..1044544 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain G5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1038552..1049544

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4P49_RS04975 (H4P49_04975)	ispD	1038613..1039323 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H4P49_RS04980 (H4P49_04980)	ispF	1039323..1039802 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H4P49_RS04985 (H4P49_04985)	truD	1039799..1040848 (+)	1050	WP_047600843.1	tRNA pseudouridine(13) synthase TruD	-
H4P49_RS04990 (H4P49_04990)	surE	1040829..1041590 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H4P49_RS04995 (H4P49_04995)	pcm	1041584..1042210 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H4P49_RS05000 (H4P49_05000)	nlpD	1042395..1043489 (+)	1095	WP_326498399.1	murein hydrolase activator NlpD	-
H4P49_RS05005 (H4P49_05005)	rpoS	1043552..1044544 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H4P49_RS05010 (H4P49_05010)	ygbN	1044638..1046002 (-)	1365	WP_000104441.1	GntP family transporter	-
H4P49_RS05015 (H4P49_05015)	ygbM	1046091..1046867 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
H4P49_RS05020 (H4P49_05020)	ygbL	1046872..1047510 (-)	639	WP_001278994.1	aldolase	-
H4P49_RS05025 (H4P49_05025)	otnK	1047507..1048769 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=412962 H4P49_RS05005 WP_000081550.1 1043552..1044544(+) (rpoS) [Escherichia coli strain G5]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=412962 H4P49_RS05005 WP_000081550.1 1043552..1044544(+) (rpoS) [Escherichia coli strain G5]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715