Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H4P50_RS13630 Genome accession   NZ_CP060061
Coordinates   2781151..2782578 (+) Length   475 a.a.
NCBI ID   WP_000980584.1    Uniprot ID   B2TYG8
Organism   Escherichia coli strain G6/7     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2776151..2787578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4P50_RS13590 (H4P50_13590) yeeW 2776335..2776529 (+) 195 WP_000988600.1 DUF5983 family protein -
  H4P50_RS13595 (H4P50_13595) - 2776575..2776655 (+) 81 Protein_2718 hypothetical protein -
  H4P50_RS27640 (H4P50_13600) - 2776944..2777117 (-) 174 WP_071592185.1 transposase domain-containing protein -
  H4P50_RS27645 (H4P50_13605) - 2777144..2777326 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  H4P50_RS13610 (H4P50_13610) tmaR 2777427..2777756 (-) 330 WP_000450409.1 DUF496 family protein -
  H4P50_RS13615 (H4P50_13615) yeeA 2777928..2778986 (-) 1059 WP_001200891.1 FUSC family protein -
  H4P50_RS13620 (H4P50_13620) sbmC 2779184..2779657 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  H4P50_RS13625 (H4P50_13625) dacD 2779776..2780942 (-) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H4P50_RS13630 (H4P50_13630) sbcB 2781151..2782578 (+) 1428 WP_000980584.1 exodeoxyribonuclease I Machinery gene
  H4P50_RS13635 (H4P50_13635) tsuB 2782621..2782848 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H4P50_RS13640 (H4P50_13640) tsuA 2782862..2783920 (-) 1059 WP_000492311.1 thiosulfate utilization transporter TsuA/YeeE -
  H4P50_RS13645 (H4P50_13645) plaP 2784099..2785457 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H4P50_RS13650 (H4P50_13650) yoeI 2785447..2785509 (-) 63 WP_010723108.1 membrane protein YoeI -
  H4P50_RS13655 (H4P50_13655) yeeY 2785724..2786653 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  H4P50_RS13660 (H4P50_13660) yeeZ 2786699..2787523 (-) 825 WP_000754752.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54470.79 Da        Isoelectric Point: 5.4700

>NTDB_id=412901 H4P50_RS13630 WP_000980584.1 2781151..2782578(+) (sbcB) [Escherichia coli strain G6/7]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=412901 H4P50_RS13630 WP_000980584.1 2781151..2782578(+) (sbcB) [Escherichia coli strain G6/7]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2TYG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585