Detailed information NTG0412878

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H4P50_RS05160
• Genome accession: NZ_CP060061
• Coordinates: 1090599..1091591 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain G6/7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1085599..1096591

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4P50_RS05130 (H4P50_05130)	ispD	1085660..1086370 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H4P50_RS05135 (H4P50_05135)	ispF	1086370..1086849 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H4P50_RS05140 (H4P50_05140)	truD	1086846..1087895 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
H4P50_RS05145 (H4P50_05145)	surE	1087876..1088637 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H4P50_RS05150 (H4P50_05150)	pcm	1088631..1089257 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H4P50_RS05155 (H4P50_05155)	nlpD	1089442..1090536 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
H4P50_RS05160 (H4P50_05160)	rpoS	1090599..1091591 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H4P50_RS05165 (H4P50_05165)	ygbN	1091685..1093049 (-)	1365	WP_047644567.1	GntP family transporter	-
H4P50_RS05170 (H4P50_05170)	ygbM	1093138..1093914 (-)	777	WP_047644569.1	HPr family phosphocarrier protein	-
H4P50_RS05175 (H4P50_05175)	ygbL	1093919..1094557 (-)	639	WP_001278994.1	aldolase	-
H4P50_RS05180 (H4P50_05180)	otnK	1094554..1095816 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=412878 H4P50_RS05160 WP_000081550.1 1090599..1091591(+) (rpoS) [Escherichia coli strain G6/7]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=412878 H4P50_RS05160 WP_000081550.1 1090599..1091591(+) (rpoS) [Escherichia coli strain G6/7]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715