Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H4P51_RS09425 Genome accession   NZ_CP060057
Coordinates   1974297..1975724 (-) Length   475 a.a.
NCBI ID   WP_000980584.1    Uniprot ID   B2TYG8
Organism   Escherichia coli strain G8     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1969297..1980724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4P51_RS09395 (H4P51_09395) yeeZ 1969352..1970176 (+) 825 WP_000754752.1 SDR family oxidoreductase -
  H4P51_RS09400 (H4P51_09400) yeeY 1970222..1971151 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  H4P51_RS09405 (H4P51_09405) yoeI 1971366..1971428 (+) 63 WP_010723108.1 membrane protein YoeI -
  H4P51_RS09410 (H4P51_09410) plaP 1971418..1972776 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H4P51_RS09415 (H4P51_09415) tsuA 1972955..1974013 (+) 1059 WP_000492311.1 thiosulfate utilization transporter TsuA/YeeE -
  H4P51_RS09420 (H4P51_09420) tsuB 1974027..1974254 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H4P51_RS09425 (H4P51_09425) sbcB 1974297..1975724 (-) 1428 WP_000980584.1 exodeoxyribonuclease I Machinery gene
  H4P51_RS09430 (H4P51_09430) dacD 1975933..1977099 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H4P51_RS09435 (H4P51_09435) sbmC 1977218..1977691 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  H4P51_RS09440 (H4P51_09440) yeeA 1977889..1978947 (+) 1059 WP_001200891.1 FUSC family protein -
  H4P51_RS09445 (H4P51_09445) tmaR 1979119..1979448 (+) 330 WP_000450409.1 DUF496 family protein -
  H4P51_RS27465 (H4P51_09450) - 1979549..1979731 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  H4P51_RS27470 - 1979851..1979931 (+) 81 WP_023441679.1 hypothetical protein -
  H4P51_RS09460 (H4P51_09460) - 1980220..1980300 (-) 81 Protein_1871 hypothetical protein -
  H4P51_RS09465 (H4P51_09465) yeeW 1980346..1980540 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54470.79 Da        Isoelectric Point: 5.4700

>NTDB_id=412807 H4P51_RS09425 WP_000980584.1 1974297..1975724(-) (sbcB) [Escherichia coli strain G8]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=412807 H4P51_RS09425 WP_000980584.1 1974297..1975724(-) (sbcB) [Escherichia coli strain G8]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2TYG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585