Detailed information NTG0412793

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H4P51_RS05210
• Genome accession: NZ_CP060057
• Coordinates: 1101449..1102489 (+)
• Length: 346 a.a.
• NCBI ID: WP_047644565.1
• Uniprot ID: -
• Organism: Escherichia coli strain G8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1096449..1107489

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4P51_RS05180 (H4P51_05180)	ispD	1096510..1097220 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H4P51_RS05185 (H4P51_05185)	ispF	1097220..1097699 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H4P51_RS05190 (H4P51_05190)	truD	1097696..1098745 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
H4P51_RS05195 (H4P51_05195)	surE	1098726..1099487 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H4P51_RS05200 (H4P51_05200)	pcm	1099481..1100107 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H4P51_RS05205 (H4P51_05205)	nlpD	1100292..1101386 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
H4P51_RS05210 (H4P51_05210)	rpoS	1101449..1102489 (+)	1041	WP_047644565.1	RNA polymerase sigma factor RpoS	Regulator
H4P51_RS05215 (H4P51_05215)	ygbN	1102524..1103888 (-)	1365	WP_047644567.1	GntP family transporter	-
H4P51_RS05220 (H4P51_05220)	ygbM	1103977..1104753 (-)	777	WP_047644569.1	HPr family phosphocarrier protein	-
H4P51_RS05225 (H4P51_05225)	ygbL	1104758..1105396 (-)	639	WP_001278994.1	aldolase	-
H4P51_RS05230 (H4P51_05230)	otnK	1105393..1106655 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 346 a.a.
• Molecular weight: 39568.63 Da
• Isoelectric Point: 4.6072

>NTDB_id=412793 H4P51_RS05210 WP_047644565.1 1101449..1102489(+) (rpoS) [Escherichia coli strain G8]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALSKHLSERPVSSEAGLFCAQ

Nucleotide

• Length: 1041 bp

>NTDB_id=412793 H4P51_RS05210 WP_047644565.1 1101449..1102489(+) (rpoS) [Escherichia coli strain G8]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTAAGTAAGCATCTGTCAGAAAGGCCAGTCTCAAGCGAGGCTGGCCTTTTCTGTGCACAATA
A

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.981	93.064	0.679