Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H6S61_RS14540 Genome accession   NZ_CP060047
Coordinates   2987222..2988088 (+) Length   288 a.a.
NCBI ID   WP_011080789.1    Uniprot ID   A0A3Q0L702
Organism   Vibrio vulnificus strain 2497-87     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2982222..2993088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS14525 (H6S61_14525) - 2983270..2984292 (+) 1023 WP_011080792.1 ABC transporter permease subunit -
  H6S61_RS14530 (H6S61_14530) - 2984292..2985335 (+) 1044 WP_011080791.1 ABC transporter permease subunit -
  H6S61_RS14535 (H6S61_14535) - 2985362..2987203 (+) 1842 WP_185890883.1 extracellular solute-binding protein -
  H6S61_RS14540 (H6S61_14540) amiE 2987222..2988088 (+) 867 WP_011080789.1 ABC transporter ATP-binding protein Regulator
  H6S61_RS14545 (H6S61_14545) - 2988091..2988921 (+) 831 WP_011080788.1 ATP-binding cassette domain-containing protein -
  H6S61_RS14550 (H6S61_14550) - 2989151..2990020 (+) 870 WP_185890885.1 hypothetical protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32120.52 Da        Isoelectric Point: 5.1128

>NTDB_id=412764 H6S61_RS14540 WP_011080789.1 2987222..2988088(+) (amiE) [Vibrio vulnificus strain 2497-87]
MNSEVVLSVKNLETEFQTDDGAVQVLHGVSFDVKKGRTLGLVGESGCGKSVTSMSIMGLLPKPYGRVIGGEILYRGKDLV
TLPADEMYAMRGDRISIIFQDPMTALNPVHTVGKQLMEVLKLHRPDLDRKARREQALEMLKKVRIPMPEKRLDEYPHNLS
GGMRQRVMIAMALACKPEILICDEPTTALDVTVQASILELINELQEETGMAVIFITHDLGVVAEICDDVAVMYGGKIVEY
ADVFELFDAPKHPYTERLMGLMPSLEHEPKQLIEIKPIDVSKFPEFRG

Nucleotide


Download         Length: 867 bp        

>NTDB_id=412764 H6S61_RS14540 WP_011080789.1 2987222..2988088(+) (amiE) [Vibrio vulnificus strain 2497-87]
ATGAACAGTGAAGTAGTTCTAAGCGTTAAAAACTTAGAGACTGAGTTTCAAACGGATGATGGTGCTGTACAAGTACTCCA
TGGTGTCAGTTTTGATGTAAAAAAAGGACGTACACTAGGTTTGGTTGGCGAATCTGGATGTGGAAAAAGTGTCACGTCCA
TGTCTATCATGGGCTTGTTGCCTAAGCCGTACGGACGAGTTATTGGTGGCGAAATCCTCTATCGAGGCAAAGATCTCGTC
ACTCTTCCTGCGGATGAAATGTATGCCATGCGCGGAGATCGTATTTCGATCATCTTCCAAGATCCTATGACAGCACTCAA
TCCTGTCCATACGGTAGGTAAGCAGCTTATGGAAGTATTGAAGCTTCATCGACCTGATTTGGATAGAAAGGCCCGTCGTG
AACAGGCGTTGGAAATGTTGAAAAAAGTTCGCATCCCAATGCCTGAAAAGCGTTTAGATGAGTACCCACATAATCTATCT
GGTGGTATGAGACAGCGAGTCATGATCGCAATGGCGTTGGCTTGCAAGCCTGAGATTCTGATTTGCGACGAACCCACAAC
CGCTCTAGATGTTACCGTTCAGGCCTCAATATTGGAGTTAATTAATGAACTGCAAGAAGAGACAGGCATGGCGGTTATCT
TTATTACCCATGACCTCGGTGTCGTAGCAGAGATATGTGATGATGTAGCGGTCATGTATGGCGGCAAGATAGTCGAATAT
GCCGATGTTTTTGAATTGTTTGATGCCCCTAAACACCCTTATACAGAGCGATTAATGGGATTGATGCCAAGTTTAGAGCA
TGAACCTAAACAATTGATCGAAATTAAGCCAATTGACGTTTCAAAATTTCCTGAATTTCGAGGTTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-276)

ABC transporter (ABC_tran)

(26-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L702

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

50.909

95.486

0.486
  amiE Streptococcus thermophilus LMD-9

50.909

95.486

0.486
  amiE Streptococcus salivarius strain HSISS4

50.545

95.486

0.483
  oppD Streptococcus mutans UA159

50.379

91.667

0.462