Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GEOTH_RS14920 Genome accession   NC_015660
Coordinates   2957515..2959329 (-) Length   604 a.a.
NCBI ID   WP_003252325.1    Uniprot ID   A0AB38R177
Organism   Parageobacillus thermoglucosidasius C56-YS93     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2952515..2964329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEOTH_RS14885 (Geoth_3036) - 2953294..2953926 (-) 633 WP_013401439.1 GTP pyrophosphokinase -
  GEOTH_RS14890 (Geoth_3037) - 2953943..2954317 (-) 375 WP_013401440.1 hypothetical protein -
  GEOTH_RS14895 (Geoth_3038) - 2954447..2955037 (+) 591 WP_003252313.1 CYTH domain-containing protein -
  GEOTH_RS14900 (Geoth_3039) - 2955037..2955639 (+) 603 WP_013877308.1 lytic transglycosylase domain-containing protein -
  GEOTH_RS14905 (Geoth_3040) - 2955745..2956158 (+) 414 WP_013401443.1 globin -
  GEOTH_RS14910 (Geoth_3041) spxH 2956151..2957044 (+) 894 WP_003252320.1 ClpXP adapter protein SpxH -
  GEOTH_RS14915 (Geoth_3042) - 2957300..2957494 (+) 195 WP_003252322.1 hypothetical protein -
  GEOTH_RS14920 (Geoth_3043) pepF 2957515..2959329 (-) 1815 WP_003252325.1 oligoendopeptidase F Regulator
  GEOTH_RS14925 (Geoth_3044) - 2959411..2960643 (-) 1233 WP_013877309.1 competence protein CoiA -
  GEOTH_RS14930 (Geoth_3045) cls 2960766..2962274 (-) 1509 WP_003252328.1 cardiolipin synthase -
  GEOTH_RS14935 (Geoth_3046) mecA 2962353..2963030 (-) 678 WP_003252330.1 adaptor protein MecA -
  GEOTH_RS14940 (Geoth_3047) - 2963246..2963917 (+) 672 WP_013877310.1 TerC family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 70159.31 Da        Isoelectric Point: 5.0109

>NTDB_id=41276 GEOTH_RS14920 WP_003252325.1 2957515..2959329(-) (pepF) [Parageobacillus thermoglucosidasius C56-YS93]
MDEKKTKKSLPLRSEIPVEETWRLEDIFPTDEAWEQEFQEVKKMIPKLSDYQGRLGESADTLYEALQYQDKISMRLGKLY
TYAHMRYDQDTTNAFYQGLNDRATSLYSEASSAMAFIVPEILAIDEAKLRAFLEEKKELKLYEHALDEINRQRPHVLSAE
EEAILAQAAEVMQASSTTFGMLNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFKAVYETYEKYKNTFAST
LAGAVKKDNFFARVRRYKSAREAALSNNNIPESVYDNLIETIHEHLPLLHRYVRLRKKVLGLDELHMYDLYTPLVQDVKM
EVTYEEAKEYMLKGLAPLGDEYIRIVKEGLENRWVDVRENKGKRSGAYSSGAYGTNPYILLNWQDNVNNLFTLVHEFGHS
VHSYYTRKTQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNYYLEGFRGTVFRQTMFAEFEHMIHIKAQ
EGEALTADSLTSMYYELNKKYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSRQILEEGEPAVKRYIEFL
KAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLEEMEQLLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=41276 GEOTH_RS14920 WP_003252325.1 2957515..2959329(-) (pepF) [Parageobacillus thermoglucosidasius C56-YS93]
ATGGATGAAAAGAAAACAAAAAAATCGTTACCATTGCGAAGTGAAATTCCTGTTGAAGAAACGTGGCGTTTAGAGGACAT
TTTCCCAACGGATGAAGCATGGGAGCAAGAATTTCAAGAAGTGAAAAAAATGATTCCGAAATTATCGGATTATCAAGGAA
GGCTGGGGGAATCGGCAGATACGTTATACGAAGCACTGCAATACCAAGATAAGATATCCATGCGTCTTGGCAAGCTGTAT
ACATATGCGCATATGCGCTATGACCAAGATACGACCAACGCTTTTTATCAAGGGCTGAACGATCGAGCGACAAGCCTTTA
CAGCGAAGCGTCAAGCGCGATGGCATTTATCGTGCCGGAAATTTTGGCGATCGATGAGGCGAAATTGCGTGCGTTTTTAG
AAGAGAAAAAAGAATTAAAGCTGTATGAACACGCTTTAGATGAAATTAACCGCCAGCGCCCGCATGTGTTGTCCGCCGAA
GAAGAGGCGATTCTGGCCCAAGCGGCAGAAGTCATGCAAGCATCTTCGACGACATTCGGCATGCTGAATAACGCCGATTT
AACGTTCCCGACGATTATCGATGAAAATGGGGAAGAAGTGGAAGTAACGCATGGCCGTTTTATTCGCTTTTTGGAAAGCA
CGGACCGCCGCGTGCGGCGCGATGCGTTTAAAGCGGTATATGAGACGTACGAAAAGTATAAAAACACATTTGCCAGCACA
CTCGCCGGCGCGGTGAAAAAAGACAACTTTTTCGCGCGCGTCCGCCGCTATAAATCGGCGCGAGAAGCGGCGTTAAGCAA
TAATAACATCCCTGAAAGTGTATACGATAATTTGATTGAAACGATTCATGAACATTTGCCGCTGTTGCACCGCTACGTTC
GTTTGCGCAAAAAAGTGCTTGGGCTTGACGAATTGCACATGTATGATTTATACACCCCGCTTGTGCAAGATGTGAAAATG
GAAGTAACGTATGAAGAAGCGAAAGAATACATGTTAAAAGGGCTTGCTCCGCTCGGCGACGAATATATTCGCATCGTCAA
GGAAGGCCTGGAAAACCGCTGGGTTGACGTGCGCGAAAACAAGGGAAAACGAAGCGGTGCTTATTCGTCAGGAGCGTACG
GAACAAATCCGTATATTTTGCTTAATTGGCAAGATAACGTCAATAATTTGTTTACACTGGTCCACGAATTCGGCCATTCT
GTGCATAGCTATTACACGCGCAAAACGCAGCCGTATCCGTATGGAAATTATTCGATTTTTGTCGCTGAAGTTGCATCGAC
ATGCAACGAAGCGCTGTTAAATGATTATTTATTAAAAACGATCGATGACGAGAAAAAACGGTTATATTTGCTTAACTATT
ATTTGGAAGGGTTCCGCGGAACGGTCTTCCGCCAAACGATGTTTGCCGAGTTTGAACATATGATTCATATTAAGGCACAG
GAAGGCGAAGCGCTTACAGCGGATTCATTGACTTCCATGTATTACGAATTAAACAAAAAATATTTTGGCGATGATATTGT
TGTCGATAAGGAAATCGGATTAGAATGGGCGCGTATTCCGCATTTTTACTACAACTATTATGTTTATCAATACGCAACCG
GCTTTAGCGCGGCGACCGCATTAAGCAGACAAATATTAGAAGAAGGGGAGCCGGCCGTGAAGCGCTATATCGAGTTTTTA
AAAGCAGGCAGCTCCGACTATCCGATTGAAGTGTTGAAAAAAGCGGGAGTGGATATGACGAGCGCGGAGCCGATCCGCCA
GGCTTGCCAAGTATTCGCAGAAAAACTGGAAGAAATGGAACAGCTATTGTCGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.931

97.848

0.498

Multiple sequence alignment