Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   H6S61_RS13150 Genome accession   NZ_CP060047
Coordinates   2680786..2684190 (+) Length   1134 a.a.
NCBI ID   WP_072608836.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2497-87     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2675786..2689190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS13125 (H6S61_13125) sucC 2675975..2677141 (+) 1167 WP_017421012.1 ADP-forming succinate--CoA ligase subunit beta -
  H6S61_RS13130 (H6S61_13130) sucD 2677141..2678013 (+) 873 WP_072608837.1 succinate--CoA ligase subunit alpha -
  H6S61_RS13135 (H6S61_13135) znuB 2678095..2678880 (-) 786 WP_017421010.1 zinc ABC transporter permease subunit ZnuB -
  H6S61_RS13140 (H6S61_13140) znuC 2678873..2679658 (-) 786 WP_038939421.1 zinc ABC transporter ATP-binding protein ZnuC -
  H6S61_RS13145 (H6S61_13145) znuA 2679740..2680615 (+) 876 WP_039469073.1 zinc ABC transporter substrate-binding protein ZnuA -
  H6S61_RS13150 (H6S61_13150) tfoS 2680786..2684190 (+) 3405 WP_072608836.1 AraC family transcriptional regulator Regulator
  H6S61_RS13155 (H6S61_13155) - 2684987..2685214 (+) 228 WP_017421006.1 FeoA family protein -
  H6S61_RS13160 (H6S61_13160) feoB 2685214..2687490 (+) 2277 WP_185890736.1 Fe(2+) transporter permease subunit FeoB -
  H6S61_RS13165 (H6S61_13165) - 2687487..2687717 (+) 231 WP_185890738.1 FeoC-like transcriptional regulator -
  H6S61_RS13170 (H6S61_13170) - 2687828..2688256 (-) 429 WP_026050454.1 HIT domain-containing protein -

Sequence

Protein


Download         Length: 1134 a.a.        Molecular weight: 126502.06 Da        Isoelectric Point: 5.4504

>NTDB_id=412751 H6S61_RS13150 WP_072608836.1 2680786..2684190(+) (tfoS) [Vibrio vulnificus strain 2497-87]
MLRILAWLLLAGLTLPFKALALDGNSAIFYPLPGQEQGTFVAAKNLFVGGDGGLWIHDVHGKVQYFDGNTLLPKRGSLLE
FPSEQVAFHQGSFWTFVANEVFQTYPNQKRQLAFSLNPGAEIRKIGSSDGHIWVSDGINFYDYDIESKELKTYSLLSLYQ
NNQSSYVYINDAKRVLSKWVLGTTSGAYLSQGEQFTHIKASAKHFVAKLYFSPTRRELLVGTLNGAALIDILKPTQKNIM
IGESHVLSMTETNQEYWIGTEHGLYSYSFLNGQVAKVKAAGAQDVSPDNRKIYSLVNDEQGGIWVATNSGILYYSLFGRK
FERLNNITEEKASRFNGNITKIVYASDETIWFKDANNLYRAIGVNKQYSRVRLPIKVNDFALEDGNIWIASEQGLYIYDT
NQYKLRSFDLPSYLKGKEIDFVSVSPQGKVWISSGYRLAAIGVADGRFQDYGDRWIASQNLPARILGLEVDQKVPLIVRT
DHGAYVLENDKIRFERNTQSFGESVDIAEAKDGSLWFAGTHGIYRKDPTEKTLGELALPQENVKPICLITDASGIWMVSS
IGLSFYNFDGALRKHFGSRSGIMSNEFVEGSCAASFGEAQSGSVLVLGSKHGLVFADRDDLMVSKLPEPRVVISQVRIDD
QVANVGQKEWQLPELAYGSAISFGLGVMPNAYGETLHYRLNQEHWQTTEAGQVSFEHLAAGDYLLSVKTSLVAGDSVQVR
FTVLHPWYQTTMAMAIFVLLIVALGGLVVFWRSRYVSVQNRELTALVALKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
NVARSLRQSVDALLSKPSVEPASEYQEHQMRIAMLLEELKSSPSDGTDGYLQNFNVSHIIQSVVDVWEDELSKIGVQVHI
SSESDDYRVAVGQFNLDVIFNSVFASVLKRAYRGQMLDIVVREQNDFVEVSFIDFGQPFSTNTDAEDSAGVEPAKVDTAI
EKLPALVEQSGGRLSLFSSAERNKIEILWPKAVESLINDEEPSVFVDSVDPSPVTEVSSEGAPSPEQLWLAKVEAMVAEH
YTNPEFGTAMAAKMLYVSERSLQRRFKSANSRTFTDYLTEVRLEKACESLLAGEKVVDVAFASGFNDPSYFSQRFKLYFG
VPPSKFASDALESE

Nucleotide


Download         Length: 3405 bp        

>NTDB_id=412751 H6S61_RS13150 WP_072608836.1 2680786..2684190(+) (tfoS) [Vibrio vulnificus strain 2497-87]
TTGCTGCGTATTCTTGCCTGGCTTCTACTCGCAGGGCTTACACTACCGTTCAAAGCGCTAGCTTTGGACGGAAACTCTGC
CATATTTTACCCACTGCCTGGACAAGAGCAGGGAACCTTTGTTGCTGCTAAAAATCTCTTTGTTGGCGGTGATGGTGGTT
TATGGATACATGACGTGCACGGCAAAGTGCAATATTTCGATGGTAATACCTTGTTGCCGAAACGTGGCAGCCTTCTAGAG
TTTCCTTCCGAGCAAGTGGCCTTTCACCAAGGCAGTTTTTGGACTTTTGTCGCGAACGAAGTCTTCCAAACGTACCCCAA
TCAGAAACGTCAGTTAGCGTTTAGCTTAAATCCGGGGGCAGAAATCAGAAAAATTGGCAGCTCAGATGGTCACATTTGGG
TGAGTGATGGCATCAATTTTTATGACTACGATATTGAATCAAAAGAATTAAAAACTTATTCCTTACTCTCGTTGTATCAA
AATAATCAGAGTAGTTACGTCTACATCAATGATGCAAAGAGGGTTTTAAGCAAATGGGTACTTGGTACCACATCGGGAGC
TTATCTATCACAAGGTGAGCAATTTACTCATATCAAAGCGTCAGCGAAGCATTTCGTTGCCAAACTGTACTTTTCTCCCA
CTCGTCGTGAGTTACTGGTGGGGACGCTAAATGGTGCTGCGCTCATTGATATTTTAAAGCCGACTCAAAAAAACATCATG
ATTGGAGAGTCTCATGTGCTTTCGATGACAGAAACCAATCAAGAATATTGGATTGGCACAGAACATGGTCTGTACAGTTA
CTCGTTTTTAAATGGACAAGTGGCCAAAGTGAAAGCCGCAGGTGCGCAAGATGTCTCTCCTGATAATCGAAAAATTTACT
CGCTGGTGAATGATGAACAAGGGGGCATTTGGGTTGCGACGAACAGTGGCATTCTCTACTACTCTCTGTTTGGCCGAAAA
TTTGAACGTCTTAATAACATCACCGAAGAAAAAGCCAGCCGTTTTAATGGCAACATCACCAAAATTGTCTATGCATCAGA
TGAAACGATTTGGTTTAAAGATGCAAACAATCTTTACCGGGCCATTGGGGTTAATAAACAATACAGCCGCGTGCGTTTGC
CGATAAAGGTAAATGACTTTGCCCTTGAAGATGGAAACATCTGGATTGCTTCCGAGCAAGGTTTGTATATTTACGACACG
AATCAGTACAAACTTCGATCGTTCGATTTACCGAGTTACCTTAAAGGTAAAGAGATTGATTTTGTTTCGGTCAGCCCTCA
AGGCAAGGTTTGGATCAGTTCGGGTTATCGATTAGCCGCCATTGGCGTTGCCGATGGGCGCTTCCAAGATTATGGCGATC
GGTGGATTGCCAGCCAAAATTTGCCCGCTCGAATTTTGGGTCTAGAAGTGGATCAAAAAGTCCCGTTAATCGTAAGAACC
GATCATGGGGCTTATGTGCTAGAAAACGACAAGATCCGTTTTGAGCGAAACACGCAGTCTTTTGGCGAAAGTGTCGATAT
TGCAGAAGCGAAAGATGGGTCTCTATGGTTTGCAGGGACTCACGGCATCTATCGTAAAGATCCCACAGAAAAAACGTTAG
GAGAGCTGGCACTTCCTCAGGAAAACGTGAAGCCTATTTGCCTAATCACCGATGCTAGTGGCATTTGGATGGTGAGTTCA
ATTGGCCTCAGTTTTTACAATTTTGACGGAGCACTGCGTAAGCACTTTGGGTCTCGCTCGGGCATTATGAGTAACGAGTT
CGTTGAAGGCTCATGTGCGGCTTCATTTGGAGAAGCGCAATCCGGCTCGGTGTTAGTACTGGGTTCAAAGCATGGCTTGG
TATTTGCGGACCGTGATGACCTAATGGTATCCAAACTACCTGAACCTAGAGTGGTCATCAGCCAAGTTCGTATTGATGAT
CAGGTTGCAAATGTCGGACAAAAAGAGTGGCAATTACCCGAGTTAGCGTATGGTTCTGCGATCAGTTTTGGCCTCGGCGT
GATGCCCAATGCTTACGGTGAAACGCTACATTACCGTTTAAACCAGGAACACTGGCAAACCACAGAAGCCGGACAAGTCT
CTTTTGAACACCTTGCGGCAGGTGATTACTTGTTAAGTGTTAAAACCAGTTTAGTCGCAGGGGATTCCGTGCAAGTTCGC
TTTACGGTGTTACACCCGTGGTATCAAACTACGATGGCGATGGCGATTTTTGTTCTGCTTATCGTAGCGTTAGGCGGCTT
AGTTGTTTTCTGGCGTTCTCGTTACGTCAGTGTTCAAAACCGTGAGTTAACGGCATTGGTGGCATTGAAGACCAATCAAT
TACGTCATCAGAGTCGAGTGCTGCTCACCAGTAACCAACAACTTCGCAAACAGATCCAAGTTAGAAATTTGCTGGTTGAC
AATGTTGCCCGTTCATTACGTCAAAGTGTGGATGCATTACTGAGCAAGCCATCGGTTGAACCTGCCTCAGAGTATCAGGA
ACATCAAATGCGCATAGCAATGCTTTTGGAAGAGTTAAAAAGCTCGCCCAGCGATGGTACTGACGGGTATCTGCAAAACT
TTAACGTCAGCCATATCATTCAGTCGGTTGTCGACGTTTGGGAAGATGAACTCAGTAAAATCGGTGTTCAGGTGCACATT
TCTAGCGAATCGGATGACTATCGTGTCGCAGTAGGGCAGTTTAATCTGGATGTCATTTTTAATAGTGTTTTTGCAAGTGT
GTTGAAACGCGCCTATCGTGGCCAAATGCTTGATATTGTGGTCAGAGAGCAAAACGATTTTGTCGAAGTGTCATTTATTG
ATTTTGGCCAGCCCTTTAGTACGAATACGGACGCCGAGGATAGCGCTGGTGTTGAGCCGGCAAAAGTCGATACTGCAATT
GAGAAGCTACCTGCTTTAGTCGAACAAAGTGGCGGACGCTTAAGCTTGTTCAGTAGCGCTGAGCGAAACAAGATCGAAAT
ACTGTGGCCGAAAGCGGTTGAGTCTCTGATAAATGACGAAGAGCCAAGCGTTTTTGTTGATTCAGTCGATCCCTCTCCAG
TTACGGAAGTCTCATCCGAAGGCGCTCCATCGCCAGAGCAGTTGTGGCTGGCGAAGGTCGAGGCTATGGTGGCAGAGCAT
TATACAAACCCAGAATTTGGCACGGCAATGGCGGCCAAGATGCTCTATGTTTCTGAGCGCAGCCTACAGAGACGGTTTAA
ATCAGCGAACTCTCGTACATTTACGGATTACCTCACCGAAGTTCGTTTAGAAAAAGCATGCGAAAGTTTGTTGGCCGGTG
AAAAAGTGGTTGATGTGGCTTTCGCATCGGGATTTAACGATCCTTCCTATTTTAGTCAACGTTTTAAACTGTACTTTGGC
GTGCCCCCTTCAAAATTTGCCAGTGACGCTCTAGAGTCCGAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1052-1126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.51

100

0.399

Multiple sequence alignment