Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   GSY53_RS20055 Genome accession   NZ_CP047325
Coordinates   3924436..3925239 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain GOT9     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3919436..3930239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY53_RS20030 (GSY53_20030) glpQB 3920582..3921313 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  GSY53_RS20035 (GSY53_20035) yqiI 3921392..3922012 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  GSY53_RS20040 (GSY53_20040) yqiH 3922027..3922320 (-) 294 WP_003230284.1 lipoprotein -
  GSY53_RS20045 (GSY53_20045) - 3922628..3922780 (+) 153 WP_003230276.1 hypothetical protein -
  GSY53_RS20050 (GSY53_20050) yqiG 3922853..3923971 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  GSY53_RS20055 (GSY53_20055) spo0A 3924436..3925239 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  GSY53_RS20060 (GSY53_20060) spoIVB 3925515..3926795 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  GSY53_RS20065 (GSY53_20065) recN 3926970..3928700 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  GSY53_RS20070 (GSY53_20070) argR 3928737..3929186 (-) 450 WP_003230265.1 arginine repressor ArgR -
  GSY53_RS20075 (GSY53_20075) yqxC 3929284..3930129 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=412742 GSY53_RS20055 WP_003226427.1 3924436..3925239(-) (spo0A) [Bacillus subtilis strain GOT9]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=412742 GSY53_RS20055 WP_003226427.1 3924436..3925239(-) (spo0A) [Bacillus subtilis strain GOT9]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment