Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GSY53_RS19070 Genome accession   NZ_CP047325
Coordinates   3747195..3747815 (+) Length   206 a.a.
NCBI ID   WP_015714153.1    Uniprot ID   A0A8E0VT51
Organism   Bacillus subtilis strain GOT9     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3742195..3752815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY53_RS19030 (GSY53_19030) ptsA 3743326..3743832 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  GSY53_RS19035 (GSY53_19035) ypqA 3743970..3744389 (+) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  GSY53_RS19040 (GSY53_19040) sppG 3744410..3744787 (-) 378 WP_014477159.1 YppG family protein -
  GSY53_RS19045 (GSY53_19045) yppF 3744975..3745163 (+) 189 WP_003230690.1 YppF family protein -
  GSY53_RS19050 (GSY53_19050) yppE 3745202..3745573 (-) 372 WP_015714151.1 YppE family protein -
  GSY53_RS19055 (GSY53_19055) yppD 3745619..3745864 (-) 246 WP_015251831.1 YppD family protein -
  GSY53_RS19060 (GSY53_19060) sspM 3746063..3746167 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  GSY53_RS19065 (GSY53_19065) yppC 3746192..3747154 (-) 963 WP_003230679.1 DUF2515 domain-containing protein -
  GSY53_RS19070 (GSY53_19070) recU 3747195..3747815 (+) 621 WP_015714153.1 Holliday junction resolvase RecU Machinery gene
  GSY53_RS19075 (GSY53_19075) ponA 3747837..3750581 (+) 2745 WP_003230676.1 PBP1A family penicillin-binding protein -
  GSY53_RS19080 (GSY53_19080) ypoC 3750657..3751151 (-) 495 WP_015714154.1 YpoC family protein -
  GSY53_RS19085 (GSY53_19085) nth 3751148..3751807 (-) 660 WP_009967580.1 endonuclease III -
  GSY53_RS19090 (GSY53_19090) dnaD 3751826..3752524 (-) 699 WP_015714155.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23915.08 Da        Isoelectric Point: 9.7224

>NTDB_id=412741 GSY53_RS19070 WP_015714153.1 3747195..3747815(+) (recU) [Bacillus subtilis strain GOT9]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHAHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=412741 GSY53_RS19070 WP_015714153.1 3747195..3747815(+) (recU) [Bacillus subtilis strain GOT9]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGCCCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment