Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H6S61_RS09870 Genome accession   NZ_CP060047
Coordinates   1984784..1985653 (+) Length   289 a.a.
NCBI ID   WP_017420475.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2497-87     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1979784..1990653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS09855 (H6S61_09855) - 1980819..1981844 (+) 1026 WP_011078910.1 ABC transporter permease subunit -
  H6S61_RS09860 (H6S61_09860) - 1981846..1982889 (+) 1044 WP_038941681.1 ABC transporter permease subunit -
  H6S61_RS09865 (H6S61_09865) - 1982931..1984757 (+) 1827 WP_017420476.1 extracellular solute-binding protein -
  H6S61_RS09870 (H6S61_09870) amiE 1984784..1985653 (+) 870 WP_017420475.1 ABC transporter ATP-binding protein Regulator
  H6S61_RS09875 (H6S61_09875) - 1985664..1986503 (+) 840 WP_072599144.1 ATP-binding cassette domain-containing protein -
  H6S61_RS09880 (H6S61_09880) - 1986545..1988380 (-) 1836 WP_238788313.1 LTA synthase family protein -
  H6S61_RS09885 (H6S61_09885) - 1988672..1989097 (+) 426 WP_185890351.1 phosphate-starvation-inducible PsiE family protein -
  H6S61_RS09890 (H6S61_09890) - 1989200..1990204 (+) 1005 WP_185890353.1 SEC-C metal-binding domain-containing protein -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32343.51 Da        Isoelectric Point: 4.8532

>NTDB_id=412741 H6S61_RS09870 WP_017420475.1 1984784..1985653(+) (amiE) [Vibrio vulnificus strain 2497-87]
MQDDVILSVRDLEVSFTTDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGQIVNGQILYRGTDLV
TLPAEQMYAMRGDRISIIFQDPMTALNPVHTVGRQINEVLELHRPDLDKRARNEYALEMLKKVKIPLPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQQETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEY
AEIFELFDHPKHPYTERLMGLMPSLDSEPKQLIDIKPMDSRMFEVSQRS

Nucleotide


Download         Length: 870 bp        

>NTDB_id=412741 H6S61_RS09870 WP_017420475.1 1984784..1985653(+) (amiE) [Vibrio vulnificus strain 2497-87]
ATGCAGGATGATGTGATTCTGAGTGTCAGAGATCTTGAGGTCTCTTTCACCACCGATGATGGCCCAGTCAAGGTATTGCA
CGGCGTCAATTTTGACGTTCGTGCAGGACGCACTTTGGGACTGGTTGGTGAGTCTGGTAGTGGCAAAAGTGTCACTTCCA
TGTCGATCATGGGGTTGTTGCCCAAGCCTTATGGTCAGATTGTGAATGGACAAATTCTCTATCGCGGCACCGATTTGGTG
ACGCTGCCTGCTGAGCAGATGTACGCGATGCGTGGTGATCGAATCTCCATCATTTTTCAAGATCCAATGACGGCGCTTAA
TCCAGTTCACACCGTTGGTCGCCAGATTAACGAAGTCTTAGAGTTACACCGCCCTGATTTGGATAAACGCGCTCGCAACG
AGTACGCCCTTGAGATGCTGAAAAAAGTGAAAATTCCACTGCCAGAGAAGCGCCTCAATGAGTACCCGCACAACCTATCT
GGCGGGATGCGTCAGCGCGTGATGATCGCCATGGCACTGGCGTGCAAACCGGATATCTTGATCTGTGATGAGCCAACTAC
TGCGTTGGATGTGACCGTTCAGGCCTCCATTTTGGAACTGATGAACGAGTTACAGCAAGAAACCGGTATGGCGATGATAT
TCATCACGCATGATCTGGGTGTGGTGGCGGAAGTGTGCGACGACGTCGCGGTCATGTACGGTGGTCGGATTGTTGAGTAC
GCAGAGATTTTTGAACTGTTTGATCATCCTAAGCACCCCTACACTGAACGGTTGATGGGCTTAATGCCAAGCTTGGACAG
TGAGCCTAAGCAGCTCATCGACATTAAGCCGATGGATAGTCGCATGTTTGAAGTCAGTCAGAGGAGCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

51.282

94.464

0.484
  amiE Streptococcus thermophilus LMD-9

51.282

94.464

0.484
  amiE Streptococcus salivarius strain HSISS4

51.282

94.464

0.484
  oppD Streptococcus mutans UA159

49.455

95.156

0.471

Multiple sequence alignment