Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GSY53_RS15640 Genome accession   NZ_CP047325
Coordinates   3015493..3015771 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain GOT9     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3010493..3020771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY53_RS15620 (GSY53_15620) panEB 3011680..3012591 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  GSY53_RS15625 (GSY53_15625) ampS 3012625..3013857 (-) 1233 WP_003232341.1 aminopeptidase -
  GSY53_RS15630 (GSY53_15630) ykpC 3013967..3014101 (-) 135 WP_003238865.1 protein YkpC -
  GSY53_RS15635 (GSY53_15635) mreBH 3014202..3015209 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  GSY53_RS15640 (GSY53_15640) abrB 3015493..3015771 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  GSY53_RS15645 (GSY53_15645) kinC 3015961..3017247 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  GSY53_RS15650 (GSY53_15650) ykqA 3017263..3018090 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  GSY53_RS15655 (GSY53_15655) ktrC 3018153..3018818 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  GSY53_RS15660 (GSY53_15660) ade 3018974..3020707 (+) 1734 WP_032721495.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=412736 GSY53_RS15640 WP_003244728.1 3015493..3015771(+) (abrB) [Bacillus subtilis strain GOT9]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=412736 GSY53_RS15640 WP_003244728.1 3015493..3015771(+) (abrB) [Bacillus subtilis strain GOT9]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment