Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GSY53_RS04865 Genome accession   NZ_CP047325
Coordinates   943218..943907 (-) Length   229 a.a.
NCBI ID   WP_159357095.1    Uniprot ID   -
Organism   Bacillus subtilis strain GOT9     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 938218..948907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY53_RS04830 (GSY53_04830) flgN 938398..938880 (-) 483 WP_003227999.1 flagellar protein FlgN -
  GSY53_RS04835 (GSY53_04835) flgM 938896..939162 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  GSY53_RS04840 (GSY53_04840) yvyF 939243..939662 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  GSY53_RS04845 (GSY53_04845) comFC 939736..940458 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  GSY53_RS04850 (GSY53_04850) comFB 940422..940718 (-) 297 WP_003227989.1 late competence protein ComFB -
  GSY53_RS04855 (GSY53_04855) comFA 940778..942169 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  GSY53_RS04860 (GSY53_04860) fakBA 942275..943120 (-) 846 WP_003244125.1 DegV family protein -
  GSY53_RS04865 (GSY53_04865) degU 943218..943907 (-) 690 WP_159357095.1 two-component system response regulator DegU Regulator
  GSY53_RS04870 (GSY53_04870) degS 943990..945147 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  GSY53_RS04875 (GSY53_04875) yvyE 945364..946017 (+) 654 WP_003227979.1 YigZ family protein -
  GSY53_RS04880 (GSY53_04880) tagV 946017..947192 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  GSY53_RS04885 (GSY53_04885) tagO 947265..948341 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25884.60 Da        Isoelectric Point: 5.9446

>NTDB_id=412690 GSY53_RS04865 WP_159357095.1 943218..943907(-) (degU) [Bacillus subtilis strain GOT9]
MTKVNIVIIDDHQLFREGVKRMLDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=412690 GSY53_RS04865 WP_159357095.1 943218..943907(-) (degU) [Bacillus subtilis strain GOT9]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATGTTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment