Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GSY53_RS02905 Genome accession   NZ_CP047325
Coordinates   551459..552103 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain GOT9     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 546459..557103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY53_RS02870 (GSY53_02870) mrpB 547651..548082 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  GSY53_RS02875 (GSY53_02875) mrpC 548082..548423 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  GSY53_RS02880 (GSY53_02880) mrpD 548416..549897 (+) 1482 WP_003228817.1 Na+/H+ antiporter subunit D -
  GSY53_RS02885 (GSY53_02885) mrpE 549903..550379 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  GSY53_RS02890 (GSY53_02890) mrpF 550379..550663 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  GSY53_RS02895 (GSY53_02895) mnhG 550647..551021 (+) 375 WP_003228812.1 monovalent cation/H(+) antiporter subunit G -
  GSY53_RS02900 (GSY53_02900) yuxO 551060..551440 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  GSY53_RS02905 (GSY53_02905) comA 551459..552103 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  GSY53_RS02910 (GSY53_02910) comP 552184..554481 (-) 2298 WP_033884760.1 histidine kinase Regulator
  GSY53_RS02915 (GSY53_02915) comX 554489..554650 (-) 162 WP_003228803.1 competence pheromone ComX -
  GSY53_RS02920 (GSY53_02920) - 554665..555525 (-) 861 WP_032677058.1 polyprenyl synthetase family protein -
  GSY53_RS02925 (GSY53_02925) degQ 555710..555850 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  GSY53_RS02930 (GSY53_02930) - 556072..556197 (+) 126 WP_003228793.1 hypothetical protein -
  GSY53_RS02935 (GSY53_02935) - 556311..556679 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=412683 GSY53_RS02905 WP_003220716.1 551459..552103(-) (comA) [Bacillus subtilis strain GOT9]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=412683 GSY53_RS02905 WP_003220716.1 551459..552103(-) (comA) [Bacillus subtilis strain GOT9]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment