Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   GSF72_RS06520 Genome accession   NZ_CP047321
Coordinates   1268581..1269027 (+) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RJ1267     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1263581..1274027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF72_RS06485 (GSF72_06485) - 1264075..1264278 (+) 204 WP_000087561.1 YqgQ family protein -
  GSF72_RS06490 (GSF72_06490) - 1264275..1265261 (+) 987 WP_000161314.1 ROK family glucokinase -
  GSF72_RS06495 (GSF72_06495) - 1265261..1265590 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  GSF72_RS06500 (GSF72_06500) - 1265587..1266210 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  GSF72_RS06505 (GSF72_06505) comGA 1266262..1267236 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  GSF72_RS06510 (GSF72_06510) comGB 1267208..1268278 (+) 1071 Protein_1231 competence type IV pilus assembly protein ComGB -
  GSF72_RS06515 (GSF72_06515) comGC 1268292..1268603 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  GSF72_RS06520 (GSF72_06520) comGD 1268581..1269027 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  GSF72_RS06525 (GSF72_06525) comGE 1269014..1269313 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  GSF72_RS06530 (GSF72_06530) comGF 1269231..1269728 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  GSF72_RS06535 (GSF72_06535) - 1269825..1269971 (+) 147 WP_001789879.1 hypothetical protein -
  GSF72_RS06540 (GSF72_06540) - 1269961..1270485 (+) 525 WP_001015117.1 shikimate kinase -
  GSF72_RS06545 (GSF72_06545) gcvT 1270644..1271735 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  GSF72_RS06550 (GSF72_06550) gcvPA 1271755..1273101 (+) 1347 WP_048665334.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=412634 GSF72_RS06520 WP_001790850.1 1268581..1269027(+) (comGD) [Staphylococcus aureus strain RJ1267]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=412634 GSF72_RS06520 WP_001790850.1 1268581..1269027(+) (comGD) [Staphylococcus aureus strain RJ1267]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment