Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   GSF72_RS04000 Genome accession   NZ_CP047321
Coordinates   802965..803681 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain RJ1267     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 797965..808681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF72_RS03980 (GSF72_03980) - 799059..800009 (+) 951 WP_000790330.1 LacI family DNA-binding transcriptional regulator -
  GSF72_RS03985 (GSF72_03985) - 800158..801642 (+) 1485 WP_000141414.1 sucrose-6-phosphate hydrolase -
  GSF72_RS03990 (GSF72_03990) - 801639..802598 (+) 960 WP_001253312.1 carbohydrate kinase family protein -
  GSF72_RS03995 (GSF72_03995) - 802786..802893 (-) 108 WP_001790167.1 hypothetical protein -
  GSF72_RS04000 (GSF72_04000) agrA 802965..803681 (-) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  GSF72_RS04005 (GSF72_04005) agrC 803700..804992 (-) 1293 WP_001554031.1 quorum-sensing sensor histidine kinase AgrC -
  GSF72_RS04010 (GSF72_04010) agrD 805017..805157 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  GSF72_RS04015 (GSF72_04015) agrB 805154..805723 (-) 570 WP_001105707.1 accessory gene regulator AgrB -
  GSF72_RS15105 hld 806013..806093 (+) 81 WP_000046022.1 delta-hemolysin -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=412620 GSF72_RS04000 WP_000688492.1 802965..803681(-) (agrA) [Staphylococcus aureus strain RJ1267]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=412620 GSF72_RS04000 WP_000688492.1 802965..803681(-) (agrA) [Staphylococcus aureus strain RJ1267]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment