Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GR140_RS25460 Genome accession   NZ_CP047311
Coordinates   5586526..5586927 (-) Length   133 a.a.
NCBI ID   WP_010955560.1    Uniprot ID   -
Organism   Pseudomonas putida strain YC-AE1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5581526..5591927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR140_RS25445 (GR140_25370) - 5583490..5585514 (-) 2025 WP_223817433.1 methyl-accepting chemotaxis protein -
  GR140_RS25450 (GR140_25375) - 5585562..5586116 (-) 555 WP_003249330.1 chemotaxis protein CheW -
  GR140_RS25455 (GR140_25380) pilH 5586113..5586478 (-) 366 WP_003249327.1 twitching motility response regulator PilH -
  GR140_RS25460 (GR140_25385) pilG 5586526..5586927 (-) 402 WP_010955560.1 response regulator Regulator
  GR140_RS25465 (GR140_25390) gshB 5587166..5588119 (+) 954 WP_003249322.1 glutathione synthase -
  GR140_RS25470 (GR140_25395) - 5588211..5589116 (+) 906 WP_003249319.1 energy transducer TonB -
  GR140_RS25475 (GR140_25400) - 5589281..5589850 (+) 570 WP_003249318.1 YqgE/AlgH family protein -
  GR140_RS25480 (GR140_25405) ruvX 5589850..5590275 (+) 426 WP_003249316.1 Holliday junction resolvase RuvX -
  GR140_RS25485 (GR140_25410) pyrR 5590325..5590843 (+) 519 WP_212628141.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  GR140_RS25490 (GR140_25415) - 5590856..5591860 (+) 1005 WP_003249311.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14602.85 Da        Isoelectric Point: 6.4772

>NTDB_id=412578 GR140_RS25460 WP_010955560.1 5586526..5586927(-) (pilG) [Pseudomonas putida strain YC-AE1]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAPQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=412578 GR140_RS25460 WP_010955560.1 5586526..5586927(-) (pilG) [Pseudomonas putida strain YC-AE1]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGTATCATTTTCG
TCGATGTGCTGATGCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTTATCCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGTTCCGATCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632

Multiple sequence alignment