Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GR140_RS20135 Genome accession   NZ_CP047311
Coordinates   4382098..4382733 (-) Length   211 a.a.
NCBI ID   WP_003247132.1    Uniprot ID   A0AAD2WBR1
Organism   Pseudomonas putida strain YC-AE1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4377098..4387733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR140_RS20105 (GR140_20040) murB 4378195..4379214 (-) 1020 WP_003247146.1 UDP-N-acetylmuramate dehydrogenase -
  GR140_RS20110 (GR140_20045) - 4379211..4379675 (-) 465 WP_212628006.1 low molecular weight protein-tyrosine-phosphatase -
  GR140_RS20115 (GR140_20050) kdsB 4379675..4380439 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GR140_RS20120 (GR140_20055) - 4380436..4380621 (-) 186 WP_003247142.1 Trm112 family protein -
  GR140_RS20125 (GR140_20060) lpxK 4380666..4381667 (-) 1002 WP_087535281.1 tetraacyldisaccharide 4'-kinase -
  GR140_RS20130 (GR140_20065) - 4381667..4382101 (-) 435 WP_003247134.1 biopolymer transporter ExbD -
  GR140_RS20135 (GR140_20070) exbB 4382098..4382733 (-) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GR140_RS20140 (GR140_20075) comA 4382889..4385105 (-) 2217 WP_212628007.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GR140_RS20145 (GR140_20080) - 4385248..4385754 (+) 507 Protein_3975 DUF2062 domain-containing protein -
  GR140_RS20150 (GR140_20085) - 4385764..4386543 (-) 780 WP_003247128.1 ABC transporter permease -
  GR140_RS20155 (GR140_20090) - 4386540..4387472 (-) 933 WP_003247127.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=412572 GR140_RS20135 WP_003247132.1 4382098..4382733(-) (exbB) [Pseudomonas putida strain YC-AE1]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=412572 GR140_RS20135 WP_003247132.1 4382098..4382733(-) (exbB) [Pseudomonas putida strain YC-AE1]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCACCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCGCTGCGGGCCGATTCGCCACTGGGCGAAATCCTGGCAGCGGGCCTCGCCAAC
TCGCGCCATGGTCGTGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment