Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GJV84_RS15175 Genome accession   NZ_CP047307
Coordinates   3135951..3136565 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain L75     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3130951..3141565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV84_RS15160 (GJV84_15160) helD 3131175..3133229 (-) 2055 WP_046671317.1 DNA helicase IV -
  GJV84_RS15165 (GJV84_15165) - 3133355..3133801 (+) 447 WP_003035892.1 YccF domain-containing protein -
  GJV84_RS15170 (GJV84_15170) yccS 3133820..3135973 (+) 2154 WP_032941200.1 YccS family putative transporter -
  GJV84_RS15175 (GJV84_15175) sxy/tfoX 3135951..3136565 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  GJV84_RS15180 (GJV84_15180) sulA 3136783..3137292 (+) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  GJV84_RS15185 (GJV84_15185) ompA 3137650..3138708 (+) 1059 WP_003836839.1 porin OmpA -
  GJV84_RS15190 (GJV84_15190) matP 3138800..3139252 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  GJV84_RS15195 (GJV84_15195) - 3139438..3141198 (+) 1761 WP_071685354.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=412552 GJV84_RS15175 WP_003035889.1 3135951..3136565(-) (sxy/tfoX) [Citrobacter freundii strain L75]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=412552 GJV84_RS15175 WP_003035889.1 3135951..3136565(-) (sxy/tfoX) [Citrobacter freundii strain L75]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment