Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GEOTH_RS02790 Genome accession   NC_015660
Coordinates   556508..557455 (+) Length   315 a.a.
NCBI ID   WP_013876287.1    Uniprot ID   A0AAN1D5D4
Organism   Parageobacillus thermoglucosidasius C56-YS93     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 551508..562455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEOTH_RS02765 (Geoth_0541) - 551890..552771 (+) 882 WP_013876285.1 branched-chain amino acid ABC transporter permease -
  GEOTH_RS02770 (Geoth_0542) - 552784..553848 (+) 1065 WP_013400048.1 branched-chain amino acid ABC transporter permease -
  GEOTH_RS02775 (Geoth_0543) - 553845..554621 (+) 777 WP_013400049.1 ABC transporter ATP-binding protein -
  GEOTH_RS02780 (Geoth_0544) - 554622..555368 (+) 747 WP_013876286.1 ABC transporter ATP-binding protein -
  GEOTH_RS02785 (Geoth_0545) - 555487..556053 (-) 567 WP_003248207.1 FAD-dependent oxidoreductase -
  GEOTH_RS02790 (Geoth_0546) ceuB 556508..557455 (+) 948 WP_013876287.1 ABC transporter permease Machinery gene
  GEOTH_RS02795 (Geoth_0547) - 557448..558398 (+) 951 WP_013876288.1 iron chelate uptake ABC transporter family permease subunit -
  GEOTH_RS02800 (Geoth_0548) - 558392..559150 (+) 759 WP_013876289.1 ABC transporter ATP-binding protein -
  GEOTH_RS02805 (Geoth_0549) - 559273..560229 (+) 957 WP_013876290.1 siderophore ABC transporter substrate-binding protein -
  GEOTH_RS02815 (Geoth_0550) - 560471..561034 (+) 564 WP_013400055.1 biotin transporter BioY -
  GEOTH_RS02820 (Geoth_0551) bioD 561034..561753 (+) 720 WP_003248217.1 dethiobiotin synthase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34581.87 Da        Isoelectric Point: 9.6176

>NTDB_id=41253 GEOTH_RS02790 WP_013876287.1 556508..557455(+) (ceuB) [Parageobacillus thermoglucosidasius C56-YS93]
MKKLFILFVILAVASLFIGVQHISLADLLMLKADDVEVLIISRIPRLISIIIAGASMSICGLIMQQLSQNKFVSPTTAGT
MDCARLGILVSLILFASAGPLLKVTIAFLFAFAGTMIFMRILEKVKYKDAIFIPLVGLMFGNIISSMTTFFAYKYNLIQS
ISSWLHGDFSMIIKGRYELLYLSVPLMIVAYMYANRFTIAGMGEEIATNLGLHYRSIVNVGLIIVAATSSVVVLTVGTLP
FLGLIIPNLVTLYYGDHLEKVLPLTALSGAIFVLACDIFGRVVIYPYEIPIGLTVGVIGSGVFLYLLVRRRKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=41253 GEOTH_RS02790 WP_013876287.1 556508..557455(+) (ceuB) [Parageobacillus thermoglucosidasius C56-YS93]
ATGAAAAAGCTGTTTATATTATTCGTCATATTAGCAGTTGCATCTTTATTTATCGGTGTCCAGCATATTTCGCTTGCCGA
TTTGCTGATGTTGAAAGCGGATGACGTAGAAGTATTAATAATCAGCCGGATTCCGCGGTTGATCAGCATTATTATTGCGG
GTGCCAGCATGAGTATTTGCGGGCTAATTATGCAGCAGTTAAGCCAAAATAAGTTTGTCTCGCCAACGACGGCGGGGACG
ATGGATTGCGCAAGGTTAGGAATTTTAGTGTCATTGATTTTGTTCGCTTCCGCAGGTCCGCTGCTGAAAGTTACGATCGC
ATTTTTATTCGCTTTTGCCGGTACGATGATTTTTATGAGAATACTTGAAAAAGTGAAATATAAAGACGCCATTTTTATTC
CGCTTGTCGGTTTAATGTTTGGCAATATCATCAGTTCCATGACAACATTTTTCGCGTATAAGTACAATTTAATCCAATCC
ATTTCGTCATGGCTGCATGGCGATTTTTCCATGATTATAAAAGGGCGGTATGAACTGCTTTACTTAAGTGTTCCGCTTAT
GATTGTCGCTTATATGTATGCGAACCGTTTTACGATAGCAGGAATGGGAGAAGAAATCGCGACAAATTTAGGCCTTCATT
ATCGGTCCATCGTCAATGTTGGGTTAATCATCGTGGCTGCTACTTCTTCTGTTGTGGTGCTGACGGTCGGGACACTGCCG
TTTTTAGGATTGATTATTCCAAACCTTGTCACATTATATTATGGAGATCATTTAGAGAAAGTCCTGCCTCTGACGGCATT
GTCAGGAGCAATTTTCGTGTTGGCTTGCGATATTTTCGGGCGCGTCGTTATTTATCCGTATGAAATCCCGATCGGTTTGA
CGGTAGGAGTCATTGGCAGCGGCGTATTTTTGTATTTGCTAGTAAGGAGAAGAAAGCAATATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(7-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.305

98.73

0.546

Multiple sequence alignment