Detailed information NTG0412522

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GTH07_RS11355
• Genome accession: NZ_CP047305
• Coordinates: 2527084..2528091 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae O37 strain ATCC 25872
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2522084..2533091

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTH07_RS11345 (GTH07_11345)	cysM	2523248..2524135 (+)	888	WP_001279365.1	cysteine synthase CysM	-
GTH07_RS11350 (GTH07_11350)	mutS	2524403..2526991 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
GTH07_RS11355 (GTH07_11355)	rpoS	2527084..2528091 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
GTH07_RS11360 (GTH07_11360)	nlpD	2528165..2529100 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
GTH07_RS11365 (GTH07_11365)	-	2529100..2529726 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GTH07_RS11370 (GTH07_11370)	surE	2529719..2530471 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
GTH07_RS11375 (GTH07_11375)	truD	2530473..2531558 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
GTH07_RS11380 (GTH07_11380)	ispF	2531588..2532064 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GTH07_RS11385 (GTH07_11385)	ispD	2532061..2532759 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GTH07_RS11390 (GTH07_11390)	ftsB	2532756..2533040 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=412522 GTH07_RS11355 WP_000116737.1 2527084..2528091(-) (rpoS) [Vibrio cholerae O37 strain ATCC 25872]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=412522 GTH07_RS11355 WP_000116737.1 2527084..2528091(-) (rpoS) [Vibrio cholerae O37 strain ATCC 25872]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1