Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GTH07_RS11210 Genome accession   NZ_CP047305
Coordinates   2499976..2500494 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae O37 strain ATCC 25872     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2494976..2505494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTH07_RS11185 (GTH07_11185) rimM 2495085..2495639 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  GTH07_RS11190 (GTH07_11190) rpsP 2495667..2495915 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  GTH07_RS11195 (GTH07_11195) ffh 2496151..2497536 (-) 1386 WP_000462721.1 signal recognition particle protein -
  GTH07_RS11200 (GTH07_11200) - 2497749..2498543 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  GTH07_RS11205 (GTH07_11205) - 2498626..2499906 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  GTH07_RS11210 (GTH07_11210) luxS 2499976..2500494 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  GTH07_RS11215 (GTH07_11215) gshA 2500543..2502117 (-) 1575 WP_000032605.1 glutamate--cysteine ligase -
  GTH07_RS11220 (GTH07_11220) - 2502229..2505084 (-) 2856 WP_001233047.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=412519 GTH07_RS11210 WP_001130227.1 2499976..2500494(-) (luxS) [Vibrio cholerae O37 strain ATCC 25872]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=412519 GTH07_RS11210 WP_001130227.1 2499976..2500494(-) (luxS) [Vibrio cholerae O37 strain ATCC 25872]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment