Detailed information NTG0412444

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H5023_RS23485
• Genome accession: NZ_CP060005
• Coordinates: 5015534..5016538 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain WK190
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5010534..5021538

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H5023_RS23470 (H5023_23370)	-	5011016..5012023 (+)	1008	WP_012613731.1	TolB family protein	-
H5023_RS23475 (H5023_23375)	mutS	5012149..5014716 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
H5023_RS23480 (H5023_23380)	fdxA	5014783..5015106 (+)	324	WP_003092272.1	ferredoxin FdxA	-
H5023_RS23485 (H5023_23385)	rpoS	5015534..5016538 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
H5023_RS23490 (H5023_23390)	-	5016643..5017536 (-)	894	WP_033981793.1	peptidoglycan DD-metalloendopeptidase family protein	-
H5023_RS23495 (H5023_23395)	-	5017582..5018217 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
H5023_RS23500 (H5023_23400)	surE	5018250..5018999 (-)	750	WP_033981791.1	5'/3'-nucleotidase SurE	-
H5023_RS23505 (H5023_23405)	truD	5018987..5020054 (-)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
H5023_RS23510 (H5023_23410)	ispF	5020051..5020524 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H5023_RS23515 (H5023_23415)	fghA	5020595..5021446 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=412444 H5023_RS23485 WP_003113871.1 5015534..5016538(-) (rpoS) [Pseudomonas aeruginosa strain WK190]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=412444 H5023_RS23485 WP_003113871.1 5015534..5016538(-) (rpoS) [Pseudomonas aeruginosa strain WK190]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653