Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   H5023_RS21085 Genome accession   NZ_CP060005
Coordinates   4501990..4502319 (-) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain WK190     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4496990..4507319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5023_RS21070 (H5023_20975) uvrB 4498377..4500389 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  H5023_RS21075 (H5023_20980) - 4500577..4501773 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  H5023_RS21085 (H5023_20990) comEA/comE1 4501990..4502319 (-) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  H5023_RS21090 (H5023_20995) - 4502510..4504507 (-) 1998 WP_010895647.1 polysaccharide biosynthesis protein -
  H5023_RS21095 (H5023_21000) - 4505072..4506168 (-) 1097 Protein_4151 IS3 family transposase -
  H5023_RS21100 (H5023_21005) - 4506246..4507265 (-) 1020 WP_003113413.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=412439 H5023_RS21085 WP_003138486.1 4501990..4502319(-) (comEA/comE1) [Pseudomonas aeruginosa strain WK190]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=412439 H5023_RS21085 WP_003138486.1 4501990..4502319(-) (comEA/comE1) [Pseudomonas aeruginosa strain WK190]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment