Detailed information NTG0412434

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GTF75_RS11745
• Genome accession: NZ_CP047301
• Coordinates: 2611893..2612900 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae O1 biovar El Tor strain DRC-193A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2606893..2617900

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTF75_RS11735 (GTF75_11750)	cysM	2608057..2608944 (+)	888	WP_001279365.1	cysteine synthase CysM	-
GTF75_RS11740 (GTF75_11755)	mutS	2609212..2611800 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
GTF75_RS11745 (GTF75_11760)	rpoS	2611893..2612900 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
GTF75_RS11750 (GTF75_11765)	nlpD	2612974..2613909 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
GTF75_RS11755 (GTF75_11770)	-	2613909..2614535 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GTF75_RS11760 (GTF75_11775)	surE	2614528..2615280 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
GTF75_RS11765 (GTF75_11780)	truD	2615282..2616367 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
GTF75_RS11770 (GTF75_11785)	ispF	2616397..2616873 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GTF75_RS11775 (GTF75_11790)	ispD	2616870..2617568 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GTF75_RS11780 (GTF75_11795)	ftsB	2617565..2617849 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=412434 GTF75_RS11745 WP_000116737.1 2611893..2612900(-) (rpoS) [Vibrio cholerae O1 biovar El Tor strain DRC-193A]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=412434 GTF75_RS11745 WP_000116737.1 2611893..2612900(-) (rpoS) [Vibrio cholerae O1 biovar El Tor strain DRC-193A]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1