Detailed information NTG0412405

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GTF75_RS01090
• Genome accession: NZ_CP047301
• Coordinates: 231882..232889 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae O1 biovar El Tor strain DRC-193A
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 226882..237889

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTF75_RS01070 (GTF75_01070)	metJ	226886..227203 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
GTF75_RS01075 (GTF75_01075)	-	227314..228591 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
GTF75_RS01080 (GTF75_01080)	rpmE	228899..229117 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
GTF75_RS01085 (GTF75_01085)	priA	229372..231576 (+)	2205	WP_001247858.1	primosomal protein N'	-
GTF75_RS01090 (GTF75_01090)	cytR	231882..232889 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
GTF75_RS01095 (GTF75_01095)	-	233061..233612 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
GTF75_RS01100 (GTF75_01100)	hslV	233749..234306 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
GTF75_RS01105 (GTF75_01105)	hslU	234372..235703 (+)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
GTF75_RS01110 (GTF75_01110)	-	235807..236724 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GTF75_RS01115 (GTF75_01115)	rraA	236799..237314 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=412405 GTF75_RS01090 WP_000224452.1 231882..232889(+) (cytR) [Vibrio cholerae O1 biovar El Tor strain DRC-193A]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=412405 GTF75_RS01090 WP_000224452.1 231882..232889(+) (cytR) [Vibrio cholerae O1 biovar El Tor strain DRC-193A]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904