Detailed information NTG0412358

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GTF71_RS01075
• Genome accession: NZ_CP047299
• Coordinates: 231597..232604 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae O1 biovar El Tor strain P27459
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 226597..237604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTF71_RS01055 (GTF71_01055)	metJ	226601..226918 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
GTF71_RS01060 (GTF71_01060)	-	227029..228306 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
GTF71_RS01065 (GTF71_01065)	rpmE	228614..228832 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
GTF71_RS01070 (GTF71_01070)	priA	229087..231291 (+)	2205	WP_001247858.1	primosomal protein N'	-
GTF71_RS01075 (GTF71_01075)	cytR	231597..232604 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
GTF71_RS01080 (GTF71_01080)	-	232776..233327 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
GTF71_RS01085 (GTF71_01085)	hslV	233464..234021 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
GTF71_RS01090 (GTF71_01090)	hslU	234087..235418 (+)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
GTF71_RS01095 (GTF71_01095)	-	235522..236439 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GTF71_RS01100 (GTF71_01100)	rraA	236514..237029 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=412358 GTF71_RS01075 WP_000224452.1 231597..232604(+) (cytR) [Vibrio cholerae O1 biovar El Tor strain P27459]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=412358 GTF71_RS01075 WP_000224452.1 231597..232604(+) (cytR) [Vibrio cholerae O1 biovar El Tor strain P27459]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904