Detailed information NTG0412339

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GTF73_RS11585
• Genome accession: NZ_CP047297
• Coordinates: 2570061..2571068 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae O1 biovar El Tor strain C6709
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2565061..2576068

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTF73_RS11575 (GTF73_11585)	cysM	2566225..2567112 (+)	888	WP_001279365.1	cysteine synthase CysM	-
GTF73_RS11580 (GTF73_11590)	mutS	2567380..2569968 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
GTF73_RS11585 (GTF73_11595)	rpoS	2570061..2571068 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
GTF73_RS11590 (GTF73_11600)	nlpD	2571142..2572077 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
GTF73_RS11595 (GTF73_11605)	-	2572077..2572703 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GTF73_RS11600 (GTF73_11610)	surE	2572696..2573448 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
GTF73_RS11605 (GTF73_11615)	truD	2573450..2574535 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
GTF73_RS11610 (GTF73_11620)	ispF	2574565..2575041 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GTF73_RS11615 (GTF73_11625)	ispD	2575038..2575736 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GTF73_RS11620 (GTF73_11630)	ftsB	2575733..2576017 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=412339 GTF73_RS11585 WP_000116737.1 2570061..2571068(-) (rpoS) [Vibrio cholerae O1 biovar El Tor strain C6709]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=412339 GTF73_RS11585 WP_000116737.1 2570061..2571068(-) (rpoS) [Vibrio cholerae O1 biovar El Tor strain C6709]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1