Detailed information NTG0412281

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H5022_RS07145
• Genome accession: NZ_CP060004
• Coordinates: 1538081..1539085 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain WK172
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1533081..1544085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H5022_RS07115 (H5022_07100)	fghA	1533173..1534024 (+)	852	WP_003122149.1	S-formylglutathione hydrolase	-
H5022_RS07120 (H5022_07105)	ispF	1534095..1534568 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H5022_RS07125 (H5022_07110)	truD	1534565..1535632 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
H5022_RS07130 (H5022_07115)	surE	1535620..1536369 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
H5022_RS07135 (H5022_07120)	-	1536402..1537037 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
H5022_RS07140 (H5022_07125)	-	1537083..1537976 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
H5022_RS07145 (H5022_07130)	rpoS	1538081..1539085 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
H5022_RS07150 (H5022_07135)	fdxA	1539511..1539834 (-)	324	WP_003092272.1	ferredoxin FdxA	-
H5022_RS07155 (H5022_07140)	mutS	1539901..1542468 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
H5022_RS07160 (H5022_07145)	-	1542594..1543601 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=412281 H5022_RS07145 WP_003113871.1 1538081..1539085(+) (rpoS) [Pseudomonas aeruginosa strain WK172]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=412281 H5022_RS07145 WP_003113871.1 1538081..1539085(+) (rpoS) [Pseudomonas aeruginosa strain WK172]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653