Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F3109_RS16845 Genome accession   NZ_CP047281
Coordinates   3406776..3407372 (-) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain N18-04101     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3401776..3412372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3109_RS16830 (F3109_16650) helD 3401987..3404041 (-) 2055 WP_057214205.1 DNA helicase IV -
  F3109_RS16835 (F3109_16655) - 3404166..3404612 (+) 447 WP_004201437.1 YccF domain-containing protein -
  F3109_RS16840 (F3109_16660) yccS 3404630..3406765 (+) 2136 WP_004201435.1 YccS family putative transporter -
  F3109_RS16845 (F3109_16665) sxy/tfoX 3406776..3407372 (-) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  F3109_RS16850 (F3109_16670) sulA 3407721..3408230 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  F3109_RS16855 (F3109_16675) ompA 3408583..3409653 (+) 1071 WP_004201430.1 porin OmpA -
  F3109_RS16860 (F3109_16680) matP 3409843..3410295 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  F3109_RS16865 (F3109_16685) - 3410481..3412238 (+) 1758 WP_179416459.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=412195 F3109_RS16845 WP_004201433.1 3406776..3407372(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain N18-04101]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=412195 F3109_RS16845 WP_004201433.1 3406776..3407372(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain N18-04101]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCTTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment