Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   H5J27_RS10885 Genome accession   NZ_CP059995
Coordinates   2338307..2338663 (+) Length   118 a.a.
NCBI ID   WP_042164417.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY3045     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2333307..2343663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5J27_RS10860 (H5J27_10860) fabF 2333519..2334763 (+) 1245 WP_042164409.1 beta-ketoacyl-ACP synthase II -
  H5J27_RS10865 (H5J27_10865) pabC 2334763..2335578 (+) 816 WP_042164411.1 aminodeoxychorismate lyase -
  H5J27_RS10870 (H5J27_10870) mltG 2335584..2336633 (+) 1050 WP_033970442.1 endolytic transglycosylase MltG -
  H5J27_RS10875 (H5J27_10875) tmk 2336662..2337294 (+) 633 WP_042164414.1 dTMP kinase -
  H5J27_RS10880 (H5J27_10880) - 2337287..2338273 (+) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  H5J27_RS10885 (H5J27_10885) pilZ 2338307..2338663 (+) 357 WP_042164417.1 PilZ domain-containing protein Machinery gene
  H5J27_RS10890 (H5J27_10890) - 2338678..2339454 (+) 777 WP_033970427.1 TatD family hydrolase -
  H5J27_RS10895 (H5J27_10895) - 2339680..2340813 (-) 1134 WP_033975973.1 aminotransferase class V-fold PLP-dependent enzyme -
  H5J27_RS10900 (H5J27_10900) - 2340899..2341537 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  H5J27_RS10905 (H5J27_10905) - 2341704..2342600 (+) 897 WP_003091113.1 radical SAM protein -
  H5J27_RS10910 (H5J27_10910) - 2342665..2343297 (+) 633 WP_039027682.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12876.96 Da        Isoelectric Point: 9.9969

>NTDB_id=412192 H5J27_RS10885 WP_042164417.1 2338307..2338663(+) (pilZ) [Pseudomonas aeruginosa strain NY3045]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRSGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=412192 H5J27_RS10885 WP_042164417.1 2338307..2338663(+) (pilZ) [Pseudomonas aeruginosa strain NY3045]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAGCGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449