Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F3113_RS15975 Genome accession   NZ_CP047279
Coordinates   3262318..3262932 (-) Length   204 a.a.
NCBI ID   WP_071681457.1    Uniprot ID   -
Organism   Citrobacter freundii strain N18-04128     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3257318..3267932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3113_RS15960 (F3113_15970) helD 3257542..3259596 (-) 2055 WP_044700756.1 DNA helicase IV -
  F3113_RS15965 (F3113_15975) - 3259722..3260168 (+) 447 WP_003035892.1 YccF domain-containing protein -
  F3113_RS15970 (F3113_15980) yccS 3260187..3262340 (+) 2154 WP_032941200.1 YccS family putative transporter -
  F3113_RS15975 (F3113_15985) sxy/tfoX 3262318..3262932 (-) 615 WP_071681457.1 TfoX/Sxy family DNA transformation protein Regulator
  F3113_RS15980 (F3113_15990) sulA 3263150..3263659 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  F3113_RS15985 (F3113_15995) ompA 3264017..3265075 (+) 1059 WP_003836839.1 porin OmpA -
  F3113_RS15990 (F3113_16000) matP 3265167..3265619 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  F3113_RS15995 (F3113_16005) - 3265805..3267565 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23238.68 Da        Isoelectric Point: 8.6049

>NTDB_id=412172 F3113_RS15975 WP_071681457.1 3262318..3262932(-) (sxy/tfoX) [Citrobacter freundii strain N18-04128]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGIMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=412172 F3113_RS15975 WP_071681457.1 3262318..3262932(-) (sxy/tfoX) [Citrobacter freundii strain N18-04128]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATTTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGATTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment