Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   H5J27_RS02205 Genome accession   NZ_CP059995
Coordinates   476799..477164 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain NY3045     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 471799..482164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5J27_RS02175 (H5J27_02175) pyrR 472421..472933 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  H5J27_RS02180 (H5J27_02180) ruvX 473045..473479 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  H5J27_RS02185 (H5J27_02185) - 473479..474048 (-) 570 WP_010793542.1 YqgE/AlgH family protein -
  H5J27_RS02190 (H5J27_02190) - 474097..474990 (-) 894 WP_003162015.1 energy transducer TonB -
  H5J27_RS02195 (H5J27_02195) gshB 475137..476090 (-) 954 WP_003100943.1 glutathione synthase -
  H5J27_RS02200 (H5J27_02200) pilG 476345..476752 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  H5J27_RS02205 (H5J27_02205) pilH 476799..477164 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  H5J27_RS02210 (H5J27_02210) - 477215..477751 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  H5J27_RS02215 (H5J27_02215) pilJ 477836..479884 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  H5J27_RS02220 (H5J27_02220) pilK 479945..480820 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=412166 H5J27_RS02205 WP_003084587.1 476799..477164(+) (pilH) [Pseudomonas aeruginosa strain NY3045]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=412166 H5J27_RS02205 WP_003084587.1 476799..477164(+) (pilH) [Pseudomonas aeruginosa strain NY3045]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364