Detailed information    

insolico Bioinformatically predicted

Overview

Name   eppA   Type   Machinery gene
Locus tag   METOK_RS01700 Genome accession   NC_015636
Coordinates   360468..361502 (-) Length   344 a.a.
NCBI ID   WP_013866518.1    Uniprot ID   F8AKD2
Organism   Methanothermococcus okinawensis IH1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355468..366502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  METOK_RS01675 (Metok_0339) - 355579..356997 (+) 1419 WP_013866515.1 proton-conducting transporter membrane subunit -
  METOK_RS01680 (Metok_0340) - 357008..358564 (+) 1557 WP_013866516.1 hydrogenase -
  METOK_RS01685 (Metok_0341) nuoB 358577..359332 (+) 756 WP_013866517.1 NADH-quinone oxidoreductase subunit NuoB -
  METOK_RS01690 - 359392..359802 (-) 411 WP_048057830.1 DUF5655 domain-containing protein -
  METOK_RS01695 - 359940..360371 (-) 432 WP_048057831.1 hypothetical protein -
  METOK_RS01700 (Metok_0343) eppA 360468..361502 (-) 1035 WP_013866518.1 A24 family peptidase C-terminal domain-containing protein Machinery gene
  METOK_RS01705 (Metok_0344) - 361612..361980 (-) 369 WP_013866519.1 cysteine-rich small domain-containing protein -
  METOK_RS01710 (Metok_0345) - 362184..362951 (+) 768 WP_013866520.1 HDIG domain-containing metalloprotein -
  METOK_RS01715 (Metok_0346) ade 363186..364901 (+) 1716 WP_013866521.1 adenine deaminase -
  METOK_RS01720 (Metok_0347) - 364936..365949 (+) 1014 WP_013866522.1 methionine synthase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38951.58 Da        Isoelectric Point: 8.4693

>NTDB_id=41214 METOK_RS01700 WP_013866518.1 360468..361502(-) (eppA) [Methanothermococcus okinawensis IH1]
MIDFNYLTIAYIINFVLLAIASYTDIKKREIPHIIVILMLLINLPIGYYLFGIESIWAFFATLILCLILGIGMGGGDIKV
FTVLAPLFVGGGSIFHIPKSILLLIGISAGLAALYPMTNILKRYWKDIIPSSTGLAVVFGFLIYLLNHYHVPYATLFLWA
YIIISIVISRKIPKYKDIIKKSGYLAPIYLIGLYLVDSNYFINNNILLSFFIYLGELTLISIVIYALTGAEISSKKPISE
LKEGDILRDMVYLKDNNVKVESANILKRFKQMVNAELGKNNEYDKIIMTDGEGLYKEDVGLLQNLHKEGKLPDELNIITT
YPFVPFVLVGYVVILIIHYYFNIF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=41214 METOK_RS01700 WP_013866518.1 360468..361502(-) (eppA) [Methanothermococcus okinawensis IH1]
ATGATTGATTTTAATTATTTAACTATTGCATATATTATTAATTTTGTCCTTTTAGCTATAGCCTCTTATACAGACATTAA
AAAAAGAGAGATTCCACATATCATCGTTATTTTAATGTTATTGATAAATTTACCCATTGGATATTATTTATTTGGTATTG
AATCTATTTGGGCATTTTTTGCAACCTTAATTTTATGTTTGATACTTGGAATAGGTATGGGTGGTGGAGATATAAAAGTA
TTTACTGTATTAGCTCCACTGTTTGTAGGTGGTGGAAGTATATTCCATATTCCAAAATCCATATTACTTTTAATAGGAAT
AAGTGCAGGATTGGCGGCATTATATCCTATGACCAATATATTGAAGAGATATTGGAAGGATATCATTCCCTCATCAACAG
GTTTAGCTGTGGTATTTGGTTTTTTGATATATCTATTAAATCATTATCATGTTCCATATGCAACGCTTTTCCTTTGGGCT
TATATTATAATTTCAATAGTCATATCTCGAAAAATACCGAAATATAAAGATATTATAAAAAAATCAGGTTATTTAGCACC
AATTTATTTAATAGGATTATATTTAGTGGATAGTAATTATTTTATAAACAACAATATTCTCCTTTCATTTTTTATATATT
TAGGTGAGCTCACCCTTATATCCATAGTAATTTATGCTTTAACAGGTGCAGAGATATCCTCAAAAAAACCCATATCTGAA
TTAAAGGAGGGAGATATATTAAGGGATATGGTTTATTTAAAGGATAATAATGTTAAAGTAGAAAGTGCAAACATTTTAAA
AAGATTTAAGCAAATGGTGAATGCAGAATTGGGAAAAAATAATGAGTACGATAAAATAATTATGACCGATGGGGAAGGAC
TATATAAAGAAGATGTAGGGCTCCTGCAAAATTTACATAAAGAAGGAAAACTACCTGATGAATTGAATATAATTACAACA
TACCCATTTGTTCCATTTGTATTGGTTGGTTATGTGGTGATTTTGATAATTCACTATTATTTTAATATATTTTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(13-98)

Archaeal Peptidase A24 C-terminal Domain (Arc_PepC)

(210-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F8AKD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eppA Methanococcus maripaludis strain DSM 2067

58.017

99.709

0.578

Multiple sequence alignment