Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   H4986_RS08420 Genome accession   NZ_CP059971
Coordinates   1592591..1592974 (+) Length   127 a.a.
NCBI ID   WP_002918422.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1587591..1597974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4986_RS08400 (H4986_08400) - 1587670..1589604 (-) 1935 WP_182101490.1 ribonuclease R family protein -
  H4986_RS08405 (H4986_08405) ilvC 1589723..1590745 (+) 1023 WP_032581040.1 ketol-acid reductoisomerase -
  H4986_RS08410 (H4986_08410) - 1590749..1591831 (+) 1083 WP_146314506.1 divergent polysaccharide deacetylase family protein -
  H4986_RS08415 (H4986_08415) dprA 1591821..1592594 (+) 774 WP_002918419.1 DNA-processing protein DprA Machinery gene
  H4986_RS08420 (H4986_08420) dprB 1592591..1592974 (+) 384 WP_002918422.1 Holliday junction resolvase RuvX Machinery gene
  H4986_RS08425 (H4986_08425) - 1593003..1593842 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  H4986_RS08430 (H4986_08430) msrA 1594018..1594515 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  H4986_RS08435 (H4986_08435) ppa 1594557..1595075 (-) 519 WP_002867724.1 inorganic diphosphatase -
  H4986_RS08440 (H4986_08440) adk 1595085..1595663 (-) 579 WP_002859580.1 adenylate kinase -
  H4986_RS08445 (H4986_08445) aspS 1595660..1597411 (-) 1752 WP_182101491.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14188.71 Da        Isoelectric Point: 9.0848

>NTDB_id=412113 H4986_RS08420 WP_002918422.1 1592591..1592974(+) (dprB) [Campylobacter jejuni strain C34]
MRALALDIGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=412113 H4986_RS08420 WP_002918422.1 1592591..1592974(+) (dprB) [Campylobacter jejuni strain C34]
ATGAGAGCTTTGGCTTTAGATATAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGAATACGGCATAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449