Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GKS41_RS14600 Genome accession   NZ_CP047268
Coordinates   2962061..2962828 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain DH8043     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2957061..2967828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS14580 - 2957263..2958075 (-) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -
  GKS41_RS14585 ccpN 2958101..2958739 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  GKS41_RS14590 glyS 2958840..2960879 (-) 2040 WP_159354383.1 glycine--tRNA ligase subunit beta -
  GKS41_RS14595 glyQ 2960872..2961759 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  GKS41_RS14600 recO 2962061..2962828 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  GKS41_RS14605 - 2962865..2963008 (-) 144 WP_159354384.1 YqzL family protein -
  GKS41_RS14610 era 2963164..2964069 (-) 906 WP_007408285.1 GTPase Era -
  GKS41_RS14615 - 2964050..2964460 (-) 411 WP_003152976.1 cytidine deaminase -
  GKS41_RS14620 - 2964584..2964958 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  GKS41_RS14625 ybeY 2964939..2965412 (-) 474 WP_159354385.1 rRNA maturation RNase YbeY -
  GKS41_RS14630 - 2965413..2967545 (-) 2133 WP_014418406.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=412024 GKS41_RS14600 WP_007408287.1 2962061..2962828(-) (recO) [Bacillus velezensis strain DH8043]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=412024 GKS41_RS14600 WP_007408287.1 2962061..2962828(-) (recO) [Bacillus velezensis strain DH8043]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGGACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCTGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment