Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   GKS41_RS14095 Genome accession   NZ_CP047268
Coordinates   2876789..2877589 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain DH8043     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2871789..2882589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS19785 - 2873259..2873396 (+) 138 WP_014470646.1 hypothetical protein -
  GKS41_RS14075 - 2873490..2874608 (+) 1119 WP_159354361.1 NADH-dependent flavin oxidoreductase -
  GKS41_RS14080 - 2874735..2874947 (+) 213 WP_029973891.1 spore germination protein -
  GKS41_RS14085 - 2875073..2875285 (+) 213 WP_014418351.1 spore germination protein -
  GKS41_RS14090 alr 2875460..2876641 (+) 1182 WP_159354362.1 alanine racemase -
  GKS41_RS14095 spo0A 2876789..2877589 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  GKS41_RS14100 spoIVB 2877870..2879150 (-) 1281 WP_038461527.1 SpoIVB peptidase -
  GKS41_RS14105 recN 2879314..2881044 (-) 1731 WP_007408359.1 DNA repair protein RecN Machinery gene
  GKS41_RS14110 ahrC 2881076..2881525 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  GKS41_RS14115 - 2881622..2882467 (-) 846 WP_014418353.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=412014 GKS41_RS14095 WP_003153177.1 2876789..2877589(-) (spo0A) [Bacillus velezensis strain DH8043]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=412014 GKS41_RS14095 WP_003153177.1 2876789..2877589(-) (spo0A) [Bacillus velezensis strain DH8043]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TTTTAGACATTATTATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGGGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAATTCAGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment