Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GKS41_RS13045 Genome accession   NZ_CP047268
Coordinates   2655161..2655769 (+) Length   202 a.a.
NCBI ID   WP_159354711.1    Uniprot ID   -
Organism   Bacillus velezensis strain DH8043     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2650161..2660769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS13005 - 2651181..2651687 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  GKS41_RS13010 - 2651826..2652239 (+) 414 WP_159354302.1 Hsp20/alpha crystallin family protein -
  GKS41_RS13015 - 2652269..2652736 (-) 468 WP_159354303.1 YppG family protein -
  GKS41_RS13020 - 2652923..2653105 (+) 183 WP_159354304.1 YppF family protein -
  GKS41_RS13025 - 2653144..2653512 (-) 369 WP_159354305.1 YppE family protein -
  GKS41_RS13030 - 2653558..2653803 (-) 246 WP_014418233.1 DUF5446 family protein -
  GKS41_RS13035 sspM 2654009..2654113 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  GKS41_RS13040 - 2654157..2655119 (-) 963 WP_159354306.1 DUF2515 domain-containing protein -
  GKS41_RS13045 recU 2655161..2655769 (+) 609 WP_159354711.1 Holliday junction resolvase RecU Machinery gene
  GKS41_RS13050 - 2655808..2658591 (+) 2784 WP_159354307.1 PBP1A family penicillin-binding protein -
  GKS41_RS13055 - 2658669..2659160 (-) 492 WP_022553044.1 YpoC family protein -
  GKS41_RS13060 nth 2659157..2659816 (-) 660 WP_007612187.1 endonuclease III -
  GKS41_RS13065 dnaD 2659835..2660533 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23652.73 Da        Isoelectric Point: 9.5778

>NTDB_id=412013 GKS41_RS13045 WP_159354711.1 2655161..2655769(+) (recU) [Bacillus velezensis strain DH8043]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFEKVYFLEADKLFVFWDRKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQGQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=412013 GKS41_RS13045 WP_159354711.1 2655161..2655769(+) (recU) [Bacillus velezensis strain DH8043]
GTGATTCGGTATCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCGGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCATTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAGGCTTAT
TTTAAGCAGTCTTCGACAACCGATTACAATGGGATTTATAAAGGGCGCTACATTGATTTCGAAGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGACCATCAAATTGAGCACATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGAAAAGGTTTATTTCCTCGAGGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAACGGCAGAAAGTCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGGACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment