Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   GKS41_RS11125 Genome accession   NZ_CP047268
Coordinates   2274753..2275187 (+) Length   144 a.a.
NCBI ID   WP_021493650.1    Uniprot ID   -
Organism   Bacillus velezensis strain DH8043     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2269753..2280187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS11120 - 2273253..2274464 (-) 1212 WP_128496646.1 cytochrome P450 family protein -
  GKS41_RS11125 nucA/comI 2274753..2275187 (+) 435 WP_021493650.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  GKS41_RS11130 - 2275247..2276002 (+) 756 WP_022553315.1 YoaK family protein -
  GKS41_RS11135 - 2276036..2276398 (-) 363 WP_007410383.1 hypothetical protein -
  GKS41_RS11140 - 2276590..2277918 (-) 1329 WP_128496648.1 S8 family peptidase -
  GKS41_RS11145 - 2278091..2278324 (+) 234 WP_095272140.1 hypothetical protein -
  GKS41_RS11150 - 2278580..2279287 (+) 708 WP_014417828.1 poly-gamma-glutamate hydrolase family protein -
  GKS41_RS11155 - 2279347..2279799 (+) 453 WP_014305039.1 OsmC family protein -
  GKS41_RS11160 - 2279813..2280166 (-) 354 WP_007410379.1 DMT family transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15480.42 Da        Isoelectric Point: 7.2418

>NTDB_id=412012 GKS41_RS11125 WP_021493650.1 2274753..2275187(+) (nucA/comI) [Bacillus velezensis strain DH8043]
MNAFMKWAASLLLVISLQVGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=412012 GKS41_RS11125 WP_021493650.1 2274753..2275187(+) (nucA/comI) [Bacillus velezensis strain DH8043]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGGTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATACT
CCGACGGCACGAGAGTACTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486

Multiple sequence alignment