Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GKS41_RS09700 Genome accession   NZ_CP047268
Coordinates   1880654..1880938 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain DH8043     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1875654..1885938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS09680 - 1876905..1877808 (+) 904 Protein_1879 ketopantoate reductase family protein -
  GKS41_RS09685 - 1877837..1879069 (-) 1233 WP_007409644.1 aminopeptidase -
  GKS41_RS09690 - 1879170..1879304 (-) 135 WP_003154559.1 protein YkpC -
  GKS41_RS09695 mreBH 1879376..1880383 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  GKS41_RS09700 abrB 1880654..1880938 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GKS41_RS09705 - 1881111..1882415 (+) 1305 WP_014417634.1 ATP-binding protein -
  GKS41_RS09710 - 1882417..1883244 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase -
  GKS41_RS09715 ktrC 1883285..1883950 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  GKS41_RS09720 ade 1884099..1885832 (+) 1734 WP_159354107.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=412007 GKS41_RS09700 WP_024085249.1 1880654..1880938(+) (abrB) [Bacillus velezensis strain DH8043]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=412007 GKS41_RS09700 WP_024085249.1 1880654..1880938(+) (abrB) [Bacillus velezensis strain DH8043]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment