Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   GKS41_RS09590 Genome accession   NZ_CP047268
Coordinates   1860162..1860758 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain DH8043     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1855162..1865758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS09560 - 1855376..1855831 (+) 456 WP_159354097.1 flavodoxin -
  GKS41_RS09565 dapD 1855913..1856623 (+) 711 WP_016936297.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  GKS41_RS09570 - 1856694..1857818 (+) 1125 WP_159354098.1 N-acetyldiaminopimelate deacetylase -
  GKS41_RS09575 - 1857879..1858124 (+) 246 WP_013352084.1 YkuS family protein -
  GKS41_RS09580 - 1858158..1858964 (-) 807 WP_159354099.1 mechanosensitive ion channel family protein -
  GKS41_RS09585 - 1859252..1859710 (+) 459 WP_014417617.1 TlpA disulfide reductase family protein -
  GKS41_RS09590 rok 1860162..1860758 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  GKS41_RS09595 - 1860779..1861771 (-) 993 WP_021493753.1 hypothetical protein -
  GKS41_RS09600 - 1861917..1862519 (+) 603 WP_159354100.1 molybdenum cofactor guanylyltransferase -
  GKS41_RS09605 - 1862571..1863590 (+) 1020 WP_110085530.1 molybdopterin-synthase adenylyltransferase MoeB -
  GKS41_RS09610 glp 1863608..1864900 (+) 1293 WP_159354101.1 gephyrin-like molybdotransferase Glp -
  GKS41_RS09615 mobB 1864861..1865382 (+) 522 WP_032863763.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=412006 GKS41_RS09590 WP_003154591.1 1860162..1860758(+) (rok) [Bacillus velezensis strain DH8043]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=412006 GKS41_RS09590 WP_003154591.1 1860162..1860758(+) (rok) [Bacillus velezensis strain DH8043]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCGGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment