Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   GKS41_RS09490 Genome accession   NZ_CP047268
Coordinates   1844294..1844758 (-) Length   154 a.a.
NCBI ID   WP_159354090.1    Uniprot ID   -
Organism   Bacillus velezensis strain DH8043     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1839294..1849758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS09475 - 1839775..1841595 (+) 1821 WP_159354088.1 PAS domain-containing protein -
  GKS41_RS09480 - 1841576..1842789 (-) 1214 Protein_1838 aminotransferase A -
  GKS41_RS19765 - 1842990..1843151 (-) 162 WP_007409608.1 hypothetical protein -
  GKS41_RS09485 cheV 1843340..1844251 (+) 912 WP_159354089.1 chemotaxis protein CheV -
  GKS41_RS09490 kre 1844294..1844758 (-) 465 WP_159354090.1 YkyB family protein Regulator
  GKS41_RS09495 - 1844881..1846173 (-) 1293 WP_159354091.1 MFS transporter -
  GKS41_RS09500 - 1846249..1846743 (-) 495 WP_095240832.1 L,D-transpeptidase family protein -
  GKS41_RS09505 - 1846818..1847681 (-) 864 WP_159354092.1 metallophosphoesterase -
  GKS41_RS09510 fadH 1847825..1848589 (+) 765 WP_159354093.1 2,4-dienoyl-CoA reductase -
  GKS41_RS09515 - 1848704..1849261 (+) 558 WP_159354094.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17810.58 Da        Isoelectric Point: 10.4417

>NTDB_id=412005 GKS41_RS09490 WP_159354090.1 1844294..1844758(-) (kre) [Bacillus velezensis strain DH8043]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQYLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=412005 GKS41_RS09490 WP_159354090.1 1844294..1844758(-) (kre) [Bacillus velezensis strain DH8043]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGTATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.208

100

0.922

Multiple sequence alignment