Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   BCO26_RS12055 Genome accession   NC_015634
Coordinates   2373949..2374764 (-) Length   271 a.a.
NCBI ID   WP_013860286.1    Uniprot ID   -
Organism   Heyndrickxia coagulans 2-6     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2368949..2379764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCO26_RS12030 (BCO26_2336) - 2370818..2370976 (-) 159 WP_013860282.1 small, acid-soluble spore protein K -
  BCO26_RS12035 (BCO26_2337) - 2371062..2372042 (-) 981 WP_013860283.1 metal-dependent hydrolase -
  BCO26_RS12040 (BCO26_2338) mutY 2372220..2373338 (+) 1119 WP_041819384.1 A/G-specific adenine glycosylase -
  BCO26_RS12050 (BCO26_2339) - 2373651..2373968 (-) 318 WP_013860285.1 YfhH family protein -
  BCO26_RS12055 (BCO26_2341) recX 2373949..2374764 (-) 816 WP_013860286.1 recombination regulator RecX Regulator
  BCO26_RS15710 - 2374853..2374975 (+) 123 WP_017552869.1 YfhE family protein -
  BCO26_RS12060 (BCO26_2342) - 2375056..2375238 (+) 183 WP_013860288.1 YfhD family protein -
  BCO26_RS12065 (BCO26_2344) trpA 2375498..2376289 (-) 792 WP_013860289.1 tryptophan synthase subunit alpha -
  BCO26_RS16230 (BCO26_2343) - 2376282..2376428 (-) 147 WP_013860290.1 hypothetical protein -
  BCO26_RS12070 (BCO26_2345) trpB 2376421..2377626 (-) 1206 WP_013860291.1 tryptophan synthase subunit beta -
  BCO26_RS12075 (BCO26_2346) trpCF 2377604..2379028 (-) 1425 WP_013860292.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 31453.10 Da        Isoelectric Point: 7.1465

>NTDB_id=41199 BCO26_RS12055 WP_013860286.1 2373949..2374764(-) (recX) [Heyndrickxia coagulans 2-6]
MPVITKISVQKNNKERYNIFLDGQYRFSVDEEVLARYQLLKGKELDELDIEAILAEDDIRKGVNTAIHFLSYRMRSEKEV
RDDLIKKEFAPEVIRSVILKLYEMQYLDDAEFAASFVRTQMNTTHKGPVVIERELQQKGIAPELIERALEIFDADQQVEH
ALVLAEKLSRQHARLSEKLLKQKVKQGLTVKGYPPEVISAAMAAHHVEKDEEAEWEALLQHAEKAKRKYGKFSGSAYRQK
MKQFLYRKGFPVDLIDRYLREEGDGDGKKIQ

Nucleotide


Download         Length: 816 bp        

>NTDB_id=41199 BCO26_RS12055 WP_013860286.1 2373949..2374764(-) (recX) [Heyndrickxia coagulans 2-6]
GTGCCAGTCATTACAAAAATTTCGGTTCAAAAAAACAATAAAGAACGTTACAATATTTTTCTTGACGGCCAGTACCGGTT
CAGTGTTGATGAAGAAGTGCTGGCACGGTACCAGCTTTTAAAGGGGAAAGAATTGGATGAGCTTGATATTGAAGCAATCC
TTGCCGAGGATGATATCCGGAAAGGCGTCAATACCGCCATCCATTTTCTTTCCTACCGGATGCGGTCGGAAAAAGAAGTG
CGTGATGATTTGATAAAAAAGGAATTTGCGCCGGAAGTCATCCGGAGTGTCATATTAAAGCTTTATGAAATGCAGTATCT
TGATGATGCGGAATTTGCCGCAAGTTTCGTGCGGACACAAATGAATACAACCCATAAGGGGCCTGTTGTCATTGAAAGGG
AACTTCAGCAAAAAGGCATTGCACCGGAGCTGATCGAAAGGGCGCTTGAAATTTTTGATGCTGATCAGCAAGTGGAACAC
GCCCTTGTCCTGGCAGAAAAGCTTTCCAGGCAGCATGCCCGGTTGTCGGAGAAGCTTTTAAAACAAAAAGTGAAGCAGGG
GCTTACAGTAAAAGGCTATCCGCCTGAAGTGATTTCCGCTGCGATGGCGGCGCATCATGTTGAAAAGGATGAAGAAGCAG
AGTGGGAAGCCCTTCTTCAGCATGCGGAAAAAGCAAAGCGCAAATACGGAAAGTTTTCGGGATCCGCCTACAGGCAAAAA
ATGAAGCAGTTTTTATACCGGAAAGGGTTCCCGGTTGATTTAATAGACCGCTACTTGCGGGAAGAGGGGGATGGAGATGG
AAAAAAGATACAGTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

52.471

97.048

0.509

Multiple sequence alignment