Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   GKS41_RS06625 Genome accession   NZ_CP047268
Coordinates   1309483..1310274 (+) Length   263 a.a.
NCBI ID   WP_159353925.1    Uniprot ID   -
Organism   Bacillus velezensis strain DH8043     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1304483..1315274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS06600 - 1306477..1307361 (+) 885 WP_159353924.1 PhzF family phenazine biosynthesis isomerase -
  GKS41_RS06605 - 1307438..1308022 (+) 585 WP_007408549.1 nitroreductase -
  GKS41_RS06610 - 1308062..1308253 (-) 192 WP_003155508.1 YfhD family protein -
  GKS41_RS06615 - 1308324..1308434 (-) 111 WP_003155504.1 YfhE family protein -
  GKS41_RS06620 - 1308492..1309391 (-) 900 WP_021493841.1 TIGR01777 family oxidoreductase -
  GKS41_RS06625 recX 1309483..1310274 (+) 792 WP_159353925.1 recombination regulator RecX Regulator
  GKS41_RS06630 - 1310281..1310595 (+) 315 WP_007408553.1 YfhH family protein -
  GKS41_RS06635 - 1310740..1311933 (+) 1194 WP_025284446.1 MFS transporter -
  GKS41_RS06640 - 1311973..1312362 (-) 390 WP_053285206.1 DUF2606 family protein -
  GKS41_RS06645 - 1312325..1313236 (-) 912 WP_015239429.1 trypsin-like serine peptidase -
  GKS41_RS06650 - 1313382..1313534 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  GKS41_RS06655 - 1313658..1313927 (+) 270 WP_003155492.1 YfhJ family protein -
  GKS41_RS06660 - 1314060..1314587 (+) 528 WP_015417063.1 SH3 domain-containing protein -
  GKS41_RS06665 - 1314673..1315008 (+) 336 WP_053285204.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31003.17 Da        Isoelectric Point: 6.5196

>NTDB_id=411989 GKS41_RS06625 WP_159353925.1 1309483..1310274(+) (recX) [Bacillus velezensis strain DH8043]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEREALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=411989 GKS41_RS06625 WP_159353925.1 1309483..1310274(+) (recX) [Bacillus velezensis strain DH8043]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAGAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCTTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGAGGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGTTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791

Multiple sequence alignment